DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amyrel and Amy2b

DIOPT Version :9

Sequence 1:NP_477262.1 Gene:Amyrel / 36863 FlyBaseID:FBgn0020506 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001177332.1 Gene:Amy2b / 545562 MGIID:104547 Length:453 Species:Mus musculus


Alignment Length:515 Identity:226/515 - (43%)
Similarity:292/515 - (56%) Gaps:87/515 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KFALTLTLCLAGSLSLAQHNPHWWGNRNTIVHLFEWKWSDIAQECESFLGPRGFAGVQVSPVNEN 67
            ||.|.|:|.   ....||::||....|..|||||||:|.|||:|||.:|.|:||.||||||.|||
Mouse     2 KFVLLLSLI---GFCWAQYDPHTSDGRTAIVHLFEWRWVDIAKECERYLAPKGFGGVQVSPPNEN 63

  Fly    68 IL--SAGRPWWERYQPISYKLTTRSGNEEEFGDMVRRCNDVGVRIYVDVLLNHMSGDFDGVAVGT 130
            |:  :..|||||||||||||:.||||||:||.|||.|||:||||||||.::|||.|  .|...||
Mouse    64 IVIHNPSRPWWERYQPISYKICTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCG--SGNPAGT 126

  Fly   131 A---GTEAEPSKKSFPGVPYTAQDFHPT-C--EITDWNDRFQVQQCELVGLKDLDQSSDWVRSKL 189
            :   |:...|:.:.||.|||:|.||:.. |  ||:::||.:||:.|.|.||.||....|:||:| 
Mouse   127 SSTCGSYLNPNNREFPAVPYSAWDFNDNKCNGEISNYNDAYQVRNCRLSGLLDLALEKDYVRTK- 190

  Fly   190 IEFLDHLIELGVAGFRVDAAKHMASEDLEYIYSSLSNLNIDHGFPHNSRPFIFQEVIDHGHETVS 254
                                                                   |||.|.|.:.
Mouse   191 -------------------------------------------------------VIDLGGEAIK 200

  Fly   255 RDEYKDLGAVTEFRFSEEIGNAFRGNNA--LKWLQSWGTDWGFLPSGQALTFVDNHDNQRDAGA- 316
            ..||...|.||||:|..::|...|..|.  :.:|::||..||.:||.:||.|||||||||..|| 
Mouse   201 GSEYFGNGRVTEFKFGAKLGTVIRKWNGEKMSYLKNWGEGWGLVPSDRALVFVDNHDNQRGHGAG 265

  Fly   317 ---VLNYKSPRQYKMATAFHLAYPYGISRVMSSFAF--------DDHD--TPPPQDAQERIISPE 368
               :|.:...|.||||..|.||:|||.:|||||:.:        |.:|  .||..:...:.::  
Mouse   266 GSSILTFWDARMYKMAVGFMLAHPYGFTRVMSSYRWNRNFQNGKDQNDWIGPPNNNGVTKEVT-- 328

  Fly   369 FDADGACVNGWICEHRWRQIYAMVGFKNAVRDTEITGWWDNGDNQISFCRGNKGFLAINNNLYDL 433
            .:||..|.|.|:||||||||..||.|:|.|.......||||..||::|.|||:||:..||:.:.|
Mouse   329 INADTTCGNDWVCEHRWRQIRNMVAFRNVVNGQPFANWWDNNSNQVAFSRGNRGFIVFNNDDWAL 393

  Fly   434 SQDLNTCLPAGTYCDVISGSLIDGSCTGKSVTVNENGYGYIHIGSDDFDGVLALHVDAKV 493
            |..|.|.||||||||||||..:||:|||..|.|..:|..:..|.:...|..:|:|.|:|:
Mouse   394 SATLQTGLPAGTYCDVISGDKVDGNCTGLKVNVGSDGKAHFSISNSAEDPFIAIHADSKL 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmyrelNP_477262.1 AmyAc_bac_euk_AmyA 29..398 CDD:200456 172/392 (44%)
Aamy_C 404..492 CDD:214749 43/87 (49%)
Amy2bNP_001177332.1 AmyAc_bac_euk_AmyA 25..358 CDD:200456 172/392 (44%)
Aamy_C 364..452 CDD:214749 43/87 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D231864at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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