Protein Alignment CG5065 and MS2

DIOPT Version :10

• Sequence 1: NP_611143.1
• Gene: CG5065 / 36860
• FlyBaseID: FBgn0034145
• Length: 625
• Species: Drosophila melanogaster
• Sequence 2: NP_187805.1
• Gene: MS2 / 820372
• AraportID: AT3G11980
• Length: 616
• Species: Arabidopsis thaliana
• Alignment Length: 624
• Identity: 155/624 - (24%)
• Similarity: 265/624 - (42%)
• Gaps: 114/624 - (18%)

  Fly    37 NGTLARTNGLT----HAA-SVATSSSGSYGSSSAAGSNAGSGGPTSSASLSI------------- 83
            :.::..:|.||    |.. |........:|.:.......|.||..|:|...|
plant    10 SSSIVASNKLTRLHNHCVWSTVIRDKKRFGPTWCRVGGGGDGGRNSNAERPIRVSSLLKDRGQVL 74

  Fly    84 ----AAGVASSTALPLPPSSNG---------LQMPYERFRADDTSYV------PIAQFYAGRSVF 129
                ::....:..|.|.|:.||         ..||:     ...|.|      .|..|..|:...
plant    75 IREQSSPAMDAETLVLSPNGNGRTIEINGVKTLMPF-----SGASMVGMKEGLGIISFLQGKKFL 134

  Fly   130 ITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARL-TELLNAPLFESLRQEKPKE--- 190
            |||.|||:.|||:||:||..|::..|||||:.|..:....|| .|:|:|.||.:|::.....
plant   135 ITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELFNTLKETHGASYMS 199

  Fly   191 --LSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLKLSVTINMLGTKRLVEL 253
              |:|:||::|:|....:|:.......:.:.|.|:.:|||...|:|:..:::.||..|...|:..
plant   200 FMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVALDINTRGPGNLMGF 264

  Fly   254 CHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLINWLPE-----DILDQLTPRLIG 313
            ..:...|...:.|||||.|..|   ...|...|::..|.|:..|:|..     |:..::...|..
plant   265 AKKCKKLKLFLQVSTAYVNGQR---QGRIMEKPFSMGDCIATENFLEGNRKALDVDREMKLALEA 326

  Fly   314 KR-------------------------PNTYTFTKALAEHMLLKEAGNLPVAIVRPSIVTASLNE 353
            .|                         .:||.||||:.|.|:....|::||.|:|||::.::..:
plant   327 ARKGTQNQDEAQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKD 391

  Fly   354 PFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSN---NL 415
            ||.||::.......:|....||.....:.:...|.|:||.|:|:|..:||..:.....|:   .:
plant   392 PFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEI 456

  Fly   416 LIYNCCTGQRNPIIWSEFVKHAMTSVRKHPLEGCLWYPTGD---LRMNRPMNTLNCIAKHFL--- 474
            .:|...:...||:::.:..:......:..|   |: ...||   :|:.:..|:::..:.|..
plant   457 NVYQIASSAINPLVFEDLAELLYNHYKTSP---CM-DSKGDPIMVRLMKLFNSVDDFSDHLWRDA 517

  Fly   475 --PAYILDGV----ARIMGKKPFVVNVQNKIAKAVECLEYFAT-------RQWRFKDDNVHALLH 526
              .:.::.|:    :::|.|..|:..      |:||..::.||       ...||.:.|...|:.
plant   518 QERSGLMSGMSSVDSKMMQKLKFICK------KSVEQAKHLATIYEPYTFYGGRFDNSNTQRLME 576

  Fly   527 TLSPKDREIFVFDVRHINWDKYVER-YVLGFREFLFKQR 564
            .:|..::..|.|||..|||..|:.. ::.|.|..:.|.|
plant   577 NMSEDEKREFGFDVGSINWTDYITNVHIPGLRRHVLKGR 615

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5065	NP_611143.1	FAR-N_SDR_e	126..445	CDD:187547	98/357 (27%)
		Sterile	471..562	CDD:460779	25/107 (23%)
MS2	NP_187805.1	PLN02503	1..616	CDD:215279	155/624 (25%)