DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8306 and FAR8

DIOPT Version :9

Sequence 1:NP_611140.3 Gene:CG8306 / 36857 FlyBaseID:FBgn0034142 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_190042.2 Gene:FAR8 / 823581 AraportID:AT3G44560 Length:496 Species:Arabidopsis thaliana


Alignment Length:506 Identity:140/506 - (27%)
Similarity:220/506 - (43%) Gaps:74/506 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNSVFDK--FK 71
            |...:.:.:||||||:....|||:||..|||..|||::||...::..:||    :...|:|  ||
plant     8 FLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRL----RTEAFEKDLFK 68

  Fly    72 EL-------QLQSRLS-KIVPIEGDVGLEHLGISPKD-RQTLIDNVNVVFHSAATLDFFQSLKET 127
            .|       :|.:.|| |:||:.||:.::|||:...: |:.:...:::|.:.|||.:|.:.....
plant    69 VLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDERYDIG 133

  Fly   128 TNINLRGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDP---EKI--------- 180
            ..||..|...|:...::......|:|||:|||      ..||....||.|   |:|         
plant   134 LGINTFGALNVLNFAKKCVKAQLLLHVSTAYV------CGEKPGLLPEKPFVMEEICNENGLQLD 192

  Fly   181 IQLSETLNDDALKEL-------------------EPKLLKDHPNTYTFTKHLAEHEVANVASKFP 226
            |.|...|....||||                   |...|...||||.|||.:.|..:.|.....|
plant   193 INLERELMKQRLKELNEQGCSEEGTTFYMKELGMERAKLHGWPNTYVFTKSMGEMLLGNHKENLP 257

  Fly   227 CGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITT 291
            ..|:||:|||:...||.|||...........:...||||:...:|.:.:.|.||.|:|.|.:|..
plant   258 LVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPADMVANAMIAA 322

  Fly   292 GYYVNSLQAKNGGRPADLQIFHLTSSTYKPFRFELMTDKINSYLHDYPL----NSAVWYPNLRLV 352
            .       |.:.|......::.:.||...|..:..:.:.:..|.....|    .|.:....::|:
plant   323 A-------ATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTKNSLRSRNGSMITVSKMKLI 380

  Fly   353 KSLWVFRLSAILFHFIPAIILDLVTKIGGGRPILVRLHKN-----VWNSLNTLEKFIFTEWHFD- 411
            .:|.:|.|...:.:.:|..:|.||..|...|......:||     |...:...|.::..:..|| 
plant   381 PTLALFSLYMTIRYKLPVQLLKLVDIIYPSREGDEYKNKNRKIDMVMRLVKLYEPYVLFKGIFDD 445

  Fly   412 --SKRLLALSKTLNIVDKKKFFIDIGE--LAWDEYFSNT-ILGVRQYLSKE 457
              :|.|.|..|..:..:.:.|..|...  :.|.:|..|. |.|:..::.|:
plant   446 RNTKNLCAKQKEEDNRNSENFMFDFDPKIIKWKDYLINVHIPGLITHVLKK 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8306NP_611140.3 PLN02996 6..456 CDD:215538 139/503 (28%)
FAR-N_SDR_e 13..339 CDD:187547 109/367 (30%)
FAR_C 364..454 CDD:176924 23/100 (23%)
FAR8NP_190042.2 PLN02996 1..495 CDD:215538 139/503 (28%)
FAR-N_SDR_e 12..362 CDD:187547 109/366 (30%)
Sterile 394..495 CDD:281068 23/100 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 1 1.010 - - QHG56516
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.940

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