DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8306 and Far1

DIOPT Version :9

Sequence 1:NP_611140.3 Gene:CG8306 / 36857 FlyBaseID:FBgn0034142 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_001272760.1 Gene:Far1 / 67420 MGIID:1914670 Length:515 Species:Mus musculus


Alignment Length:522 Identity:178/522 - (34%)
Similarity:297/522 - (56%) Gaps:30/522 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNS 65
            |.|.|  ::|.|:|:.:||||||:|..::|||||..|.|.::|:|:|.|.|::.|||:||:..:.
Mouse     1 MVSIP--EYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSK 63

  Fly    66 VFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLKETTNI 130
            :||:.::.....| .||:.|..::....|.:|.:|::.:||:.||:||.|||:.|.::|::...:
Mouse    64 LFDRLRDENPDFR-EKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQL 127

  Fly   131 NLRGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKEL 195
            |:..||:::.|.||:|||:..:|||:||.......::|.:||.|.||:|:|...|.::|..:.::
Mouse   128 NVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDI 192

  Fly   196 EPKLLKDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGA 260
            .|||:.|.||||.:||.|||:.|....:|....|||||::.|:||||.|||..:.|||.|.|:.|
Mouse   193 TPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAA 257

  Fly   261 SKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYY--VNSLQAKNGGRPADLQIFHLTSSTYKPFR 323
            .||:||.:....:.:.|.:|:|||||..:...:|  ||        ||.::.:::.|:.:..||.
Mouse   258 GKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVN--------RPRNIMVYNCTTGSTNPFH 314

  Fly   324 FELMTDKINSYLHDYPLNSAVWYPNLRLVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRP---- 384
            :..:.|.:|......|||....:|.::...:..:......:.|.:||::|||..::.|.:|    
Mouse   315 WGEVGDYLNHSFKMNPLNQVFRHPYVKFCSNNLMLHYWKGVKHTVPALLLDLALRLTGQKPWMMK 379

  Fly   385 ILVRLHKNVWNSLNTLEKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILG 449
            .:.||||    ::..||.|....|.:::..:..|...||..|||.|.||:.:|.|.||..|..:|
Mouse   380 TITRLHK----AMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMG 440

  Fly   450 VRQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCLT-GISTAKAALVLPVLYYLF 513
            .::|:..|.:..|..||:        |:....:..||...::|.|. .|..|::.:...:.|::.
Mouse   441 TKKYVLNEEMSGLPAARK--------HLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVV 497

  Fly   514 GL 515
            .|
Mouse   498 SL 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8306NP_611140.3 PLN02996 6..456 CDD:215538 162/455 (36%)
FAR-N_SDR_e 13..339 CDD:187547 124/327 (38%)
FAR_C 364..454 CDD:176924 31/93 (33%)
Far1NP_001272760.1 FAR-N_SDR_e 11..330 CDD:187547 124/327 (38%)
Sterile 371..447 CDD:376978 26/79 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847918
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56516
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

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