DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8306 and Far2

DIOPT Version :9

Sequence 1:NP_611140.3 Gene:CG8306 / 36857 FlyBaseID:FBgn0034142 Length:516 Species:Drosophila melanogaster
Sequence 2:XP_006237759.1 Gene:Far2 / 500368 RGDID:1565966 Length:515 Species:Rattus norvegicus


Alignment Length:521 Identity:170/521 - (32%)
Similarity:280/521 - (53%) Gaps:23/521 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNSVFD 68
            |.|..||:.:::.|||||||:|..::|||.|..|::..:|:|:|.|.|:::|||:.::..:.:|:
  Rat     2 SMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFE 66

  Fly    69 KFKELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLKETTNINLR 133
            :.||: ..:...||.||..|:......||.:|.|.|:...|:|||.|||:.|...|:|...:|:.
  Rat    67 RVKEV-CPNVHEKIRPISADLNQRDFAISKEDMQELLSCTNIVFHCAATVRFDAHLREAVQLNVT 130

  Fly   134 GTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKELEPK 198
            .|::::.:..::..|:|.:|:|:|:.|..|:.::|.:||.|.:|.|||...|.|:|..::|:.||
  Rat   131 ATQQLLLMASEMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEITPK 195

  Fly   199 LLKDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGASKG 263
            |:.|.|||||:||.|.|..|...:......|||||::.|.|:||.|||..:.|||.|..:...||
  Rat   196 LIGDRPNTYTYTKALGEVVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKG 260

  Fly   264 VLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQAKNGGRPADLQIFHLTSSTYKPFRFELMT 328
            .||.:...|..:.|.||:|.|||..|..|:|...      .||....|:|.||....|..:..|.
  Rat   261 FLRSIKATPMAVADLIPVDTVVNLTIAVGWYTAV------HRPKSTLIYHSTSGNLNPCNWYEMG 319

  Fly   329 DKINSYLHDYPLNSAVWYPNLRLVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRPILVRLHKNV 393
            .::.:.:...|..||...||.....:.:..:....:.|:.||||.|...::.|.:|.:::|...:
  Rat   320 LQVLATVEKIPFESAFRRPNADFTTNNFTTQYWNTVSHWAPAIIYDFYLRLTGRKPRMLKLMNRL 384

  Fly   394 WNSLNTLEKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILGVRQYLSKEP 458
            ..:::.||.||...|.:.:.....|...|:..|::.|..|:.:|.|.||..|.:|||::||.||.
  Rat   385 LKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKED 449

  Fly   459 IKNLEKARRKDKILLGLHVALQLSFWYGVFKLIV----------------CLTGISTAKAALVLP 507
            :..:.||::..|.|..:|.....:.:..:::|::                |...||..:|:..|.
  Rat   450 LAGIPKAKQHLKRLRNIHYLFNTALFLIIWRLLIARSQMARNIWFFIVSFCYKFISYFRASSTLK 514

  Fly   508 V 508
            |
  Rat   515 V 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8306NP_611140.3 PLN02996 6..456 CDD:215538 155/449 (35%)
FAR-N_SDR_e 13..339 CDD:187547 118/325 (36%)
FAR_C 364..454 CDD:176924 27/89 (30%)
Far2XP_006237759.1 FAR-N_SDR_e 11..318 CDD:187547 117/313 (37%)
Sterile 357..447 CDD:397244 29/89 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351512
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56516
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.760

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