DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8306 and Far1

DIOPT Version :9

Sequence 1:NP_611140.3 Gene:CG8306 / 36857 FlyBaseID:FBgn0034142 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_001011933.1 Gene:Far1 / 293173 RGDID:1306647 Length:515 Species:Rattus norvegicus


Alignment Length:522 Identity:178/522 - (34%)
Similarity:296/522 - (56%) Gaps:30/522 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNS 65
            |.|.|  ::|.|:|:.:||||||:|..::|||||..|.|.::|:|:|.|.|::.|||:||:....
  Rat     1 MVSIP--EYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGK 63

  Fly    66 VFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLKETTNI 130
            :||:.::.....| .||:.|..::....|.:|.:|::.:||:.||:||.|||:.|.::|::...:
  Rat    64 LFDRLRDENPDFR-QKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQL 127

  Fly   131 NLRGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKEL 195
            |:..||:::.|.||:|||:..:|||:||.......::|.:||.|.||:|:|...|.::|..:.::
  Rat   128 NVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDI 192

  Fly   196 EPKLLKDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGA 260
            .|||:.|.||||.:||.|||:.|....:|....|||||::.|:||||.|||..:.|||.|.|:.|
  Rat   193 TPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAA 257

  Fly   261 SKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYY--VNSLQAKNGGRPADLQIFHLTSSTYKPFR 323
            .||:||.:....:.:.|.:|:|||||..:...:|  ||        ||.::.:::.|:.:..||.
  Rat   258 GKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVN--------RPRNIMVYNCTTGSTNPFH 314

  Fly   324 FELMTDKINSYLHDYPLNSAVWYPNLRLVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRP---- 384
            :..:.|.:|......|||....:|.::...:..:......:.|.:||::|||..::.|.:|    
  Rat   315 WGEVGDYLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGVKHTVPALLLDLALRLTGQKPWMMK 379

  Fly   385 ILVRLHKNVWNSLNTLEKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILG 449
            .:.||||    ::..||.|....|.:::..:..|...||..|||.|.||:.:|.|.||..|..:|
  Rat   380 TITRLHK----AMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMG 440

  Fly   450 VRQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCLT-GISTAKAALVLPVLYYLF 513
            .::|:..|.:..|..||:        |:....:..||...::|.|. .|..|::.:...:.|::.
  Rat   441 TKKYVLNEEMSGLPAARK--------HLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVV 497

  Fly   514 GL 515
            .|
  Rat   498 SL 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8306NP_611140.3 PLN02996 6..456 CDD:215538 162/455 (36%)
FAR-N_SDR_e 13..339 CDD:187547 124/327 (38%)
FAR_C 364..454 CDD:176924 31/93 (33%)
Far1NP_001011933.1 PLN02996 2..446 CDD:215538 164/458 (36%)
FAR-N_SDR_e 11..330 CDD:187547 124/327 (38%)
Sterile 371..447 CDD:281068 26/79 (33%)
Necessary and sufficient for PEX19-mediated localization into peroxisome membrane. /evidence=ECO:0000250|UniProtKB:Q8WVX9 451..507 12/57 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351495
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56516
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.860

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