DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8306 and far1

DIOPT Version :9

Sequence 1:NP_611140.3 Gene:CG8306 / 36857 FlyBaseID:FBgn0034142 Length:516 Species:Drosophila melanogaster
Sequence 2:XP_017948360.1 Gene:far1 / 100038270 XenbaseID:XB-GENE-973776 Length:518 Species:Xenopus tropicalis


Alignment Length:518 Identity:178/518 - (34%)
Similarity:289/518 - (55%) Gaps:27/518 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNSVFDKF 70
            |.:||.|:||.|||||||:|..::|||||..|||..:|:|:|.|..:..:||:.|:....:||:.
 Frog     4 IPEFYRGKNVLITGATGFMGKVLLEKLLRSCPNVKAVYVLVRPKASQKPRERVAEMMSCKLFDRL 68

  Fly    71 KELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLKETTNINLRGT 135
            ::.|.:. ..|::.|..::....|.:|.:|:..|||.:::|||.|||:.|.:||::...:|:..|
 Frog    69 RDEQPEC-AQKVIAISSELTQPELDLSKEDQDMLIDCIDIVFHCAATVRFNESLRDAMQLNVIAT 132

  Fly   136 RRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKELEPKLL 200
            |:::.|.|:||.|:..:|||:||.|....::||.:||.|.||:|:|:..|.::|..:.::.|||:
 Frog   133 RQLLYLAQKIKKLEVFIHVSTAYANCNRKQIEEMVYPPPVDPKKLIESLEWMDDGLVNDITPKLI 197

  Fly   201 KDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGASKGVL 265
            .|.|||||:||.|||:.|....||....|||||::.|:||||.|||..:.|||.|.|:.|.||:|
 Frog   198 GDRPNTYTYTKALAEYVVQQEGSKLNIAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGIL 262

  Fly   266 RRLPLDPSIIMDYIPIDVVVNGIITTGYY--VNSLQAKNGGRPADLQIFHLTSSTYKPFRFELMT 328
            |.:....:.:.|.||:|||||..:...:|  ||..     .||.::.:::.|:....||.:..:.
 Frog   263 RTMRASNNAVADLIPVDVVVNTTLAAAWYSGVNRY-----SRPRNILVYNCTTGGTNPFHWGEVE 322

  Fly   329 DKINSYLHDYPLNSAVWYPNLRLVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRP----ILVRL 389
            ..:.|.....||..|...||:.|..:..::.....:.|..||.:.|:..:|.|..|    .:.||
 Frog   323 YHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLYDVYLRITGRSPRMMKTITRL 387

  Fly   390 HKNVWNSLNTLEKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILGVRQYL 454
            ||    ::..||.|....|.::::....|...|:..|||.|..|:.:|.|.||..|..:|.::|:
 Frog   388 HK----AMMLLEYFTSNSWVWNNENTNMLMSQLSPDDKKAFNFDVRQLHWAEYMENYCMGTKKYV 448

  Fly   455 SKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFK--LIVCLTGISTAKAALVLPVLYYLFGL 515
            ..|.:..|..||:        |:....:..|| |.  |:|.:..:..|::.:...:.|::..:
 Frog   449 LNEEMSGLPAARK--------HLNKLRNIRYG-FNTILVVLIWRVFIARSQMARNIWYFVVSM 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8306NP_611140.3 PLN02996 6..456 CDD:215538 166/455 (36%)
FAR-N_SDR_e 13..339 CDD:187547 127/327 (39%)
FAR_C 364..454 CDD:176924 28/93 (30%)
far1XP_017948360.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56516
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.030

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