DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdk4 and Cdk1

DIOPT Version :10

Sequence 1:NP_477196.1 Gene:Cdk4 / 36854 FlyBaseID:FBgn0016131 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_062169.1 Gene:Cdk1 / 54237 RGDID:2319 Length:297 Species:Rattus norvegicus


Alignment Length:296 Identity:129/296 - (43%)
Similarity:177/296 - (59%) Gaps:19/296 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 NYQELNIIGEGAYGTVYRARDVITGNIVALKKVRISLNENGVPMSTLREISLLKQLNASNHANIV 89
            :|.::..||||.||.||:.|...||.|||:||:|:...|.|||.:.:|||||||:|   .|.|||
  Rat     3 DYIKIEKIGEGTYGVVYKGRHRTTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL---RHPNIV 64

  Fly    90 KLYEVCQFLERDGQLLILLVFEHVEQDLSDLIDRLPKSG-MSPPTIQRLSRELLTGVDFLHSHRI 153
            .|.:|   |.:|.:|  .|:||.:..||...:|.:|... |....::....::|.|:.|.||.|:
  Rat    65 SLQDV---LMQDSRL--YLIFEFLSMDLKKYLDSIPPGQFMDSSLVKSYLYQILQGIVFCHSRRV 124

  Fly   154 IHRDLKPQNLLVSSQGHLKIADFGLAKTYGSEMKL-TSVVVTLWYRAPEVLLAQP-YNSTVDIWS 216
            :||||||||||:..:|.:|:||||||:.:|..::: |..|||||||:|||||... |::.|||||
  Rat   125 LHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWS 189

  Fly   217 AACIIFEMFNRRALFPGTSEKNQLDRIFELTGRPTEQQWPQTISVALEHFPQRHPK-RPKDFCPH 280
            ...|..|:..::.||.|.||.:||.|||...|.|..:.||:..|  |:.:....|| :|.....|
  Rat   190 IGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVES--LQDYKNTFPKWKPGSLASH 252

  Fly   281 LCKYAD----DLLNKMLSYDLHLRPSALACLEHDYF 312
            : |..|    |||:|||.||...|.|....|:|.||
  Rat   253 V-KNLDENGLDLLSKMLVYDPAKRISGKMALKHPYF 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk4NP_477196.1 STKc_CDK4_6_like 26..312 CDD:270831 127/293 (43%)
Cdk1NP_062169.1 STKc_CDK1_euk 3..287 CDD:270845 127/294 (43%)

Return to query results.
Submit another query.