DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk4 and Cdk6

DIOPT Version :9

Sequence 1:NP_001286493.1 Gene:Cdk4 / 36854 FlyBaseID:FBgn0016131 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_001178790.1 Gene:Cdk6 / 114483 RGDID:621121 Length:326 Species:Rattus norvegicus


Alignment Length:308 Identity:136/308 - (44%)
Similarity:205/308 - (66%) Gaps:8/308 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LKRQKMSQAKKFGDGDPFNYQELNIIGEGAYGTVYRARDVIT-GNIVALKKVRISLNENGVPMST 70
            :::..:|:|.:       .|:.:..|||||||.|::|||:.. |..||||:||:...|.|:|:||
  Rat     1 MEKDSLSRADQ-------QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLST 58

  Fly    71 LREISLLKQLNASNHANIVKLYEVCQFLERDGQLLILLVFEHVEQDLSDLIDRLPKSGMSPPTIQ 135
            :||:::|:.|....|.|:|:|::||.....|.:..:.||||||:|||:..:|::|:.|:...||:
  Rat    59 IREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIK 123

  Fly   136 RLSRELLTGVDFLHSHRIIHRDLKPQNLLVSSQGHLKIADFGLAKTYGSEMKLTSVVVTLWYRAP 200
            .:..:||.|:|||||||::||||||||:||:|.|.:|:||||||:.|..:|.|||||||||||||
  Rat   124 DMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAP 188

  Fly   201 EVLLAQPYNSTVDIWSAACIIFEMFNRRALFPGTSEKNQLDRIFELTGRPTEQQWPQTISVALEH 265
            ||||...|.:.||:||..||..|:|.|:.||.|:|:.:||.:|.::.|.|.|:.||:.:::..:.
  Rat   189 EVLLQSSYATPVDLWSVGCIFAELFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQA 253

  Fly   266 FPQRHPKRPKDFCPHLCKYADDLLNKMLSYDLHLRPSALACLEHDYFQ 313
            |..:..:..:.|...:.:...|||.|.|:::...|.||...|.|.|||
  Rat   254 FHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYGALNHPYFQ 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk4NP_001286493.1 STKc_CDK4_6_like 26..312 CDD:270831 131/286 (46%)
S_TKc 26..312 CDD:214567 131/286 (46%)
Cdk6NP_001178790.1 STKc_CDK6 11..300 CDD:270846 131/295 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 277 1.000 Domainoid score I1657
eggNOG 1 0.900 - - E1_KOG0594
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H963
Inparanoid 1 1.050 279 1.000 Inparanoid score I2838
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D419040at33208
OrthoFinder 1 1.000 - - FOG0004605
OrthoInspector 1 1.000 - - otm45619
orthoMCL 1 0.900 - - OOG6_108285
Panther 1 1.100 - - LDO PTHR24056
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2222
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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