DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdk4 and cdk12

DIOPT Version :10

Sequence 1:NP_477196.1 Gene:Cdk4 / 36854 FlyBaseID:FBgn0016131 Length:317 Species:Drosophila melanogaster
Sequence 2:XP_012826946.1 Gene:cdk12 / 100038049 XenbaseID:XB-GENE-493308 Length:1466 Species:Xenopus tropicalis


Alignment Length:313 Identity:113/313 - (36%)
Similarity:172/313 - (54%) Gaps:37/313 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DPFNYQELNIIGEGAYGTVYRARDVITGNIVALKKVRISLNENGVPMSTLREISLLKQLNASNHA 86
            |.|:.  :.|||||.||.||:|:|..||.:|||||||:...:.|.|::.:|||.:|:||   .|.
 Frog   708 DKFDI--IGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL---IHK 767

  Fly    87 NIVKLYEV-------CQFLERDGQLLILLVFEHVEQDLSDLIDRLPKSGM---SPPTIQRLSREL 141
            ::|.:.|:       ..|.:..|  ...||||:::.||..|::    ||:   |...|:...::|
 Frog   768 SVVNMKEIVTDKQDALDFKKDKG--AFYLVFEYMDHDLMGLLE----SGLVQFSEDHIKSFMKQL 826

  Fly   142 LTGVDFLHSHRIIHRDLKPQNLLVSSQGHLKIADFGLAKTYGSE--MKLTSVVVTLWYRAPEVLL 204
            :.|:::.|....:|||:|..|:|:::.|.:|:||||||:.|.||  ...|:.|:|||||.||:||
 Frog   827 MEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLL 891

  Fly   205 AQP-YNSTVDIWSAACIIFEMFNRRALFPGTSEKNQLDRIFELTGRPTEQQWPQTISVALEHFPQ 268
            .:. |...:|:||..||:.|:|.::.:|....|..||:.|..|.|.|....||..|.  |.:|..
 Frog   892 GEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIK--LPYFNT 954

  Fly   269 RHPKRPK--------DFCPHLCKYADDLLNKMLSYDLHLRPSALACLEHDYFQ 313
            ..||:..        .|.|   ..|.|||:.||:.|...|.:|...|:.|:.:
 Frog   955 MKPKKQYRRRLREEFSFVP---TPALDLLDHMLTLDPSKRCTAEQTLQSDFLK 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk4NP_477196.1 STKc_CDK4_6_like 26..312 CDD:270831 111/306 (36%)
cdk12XP_012826946.1 STKc_CDK12 702..1003 CDD:270847 113/310 (36%)

Return to query results.
Submit another query.