DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DAT and RGD1562492

DIOPT Version :9

Sequence 1:NP_001261026.1 Gene:DAT / 36849 FlyBaseID:FBgn0034136 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001102616.1 Gene:RGD1562492 / 499151 RGDID:1562492 Length:743 Species:Rattus norvegicus


Alignment Length:619 Identity:158/619 - (25%)
Similarity:260/619 - (42%) Gaps:131/619 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYGIMLVVGGIPLFYMELALGQHNRKGAIT 97
            |.:.:|.::.|::.|.:.|||||||::||||:||:.|.|:|::.||||.|||:.:||..|...|.
  Rat    55 KTENILILVAFSIGLGSTWRFPYLCHQNGGGSFLLMYLILLLLLGIPLMYMEMVIGQWLRVDNIR 119

  Fly    98 CWGRLVPLFKGIGYAVVLIAFYVDFYYNVIIAWSLRFFFASFTNSLPWTSCNNIWNTPNCRPFES 162
            .|..|||...|:||:.:|....|..|.:.:::|||.:...||....||.:|              
  Rat   120 AWKHLVPWLSGVGYSSMLACALVILYNSALVSWSLFYLGQSFDYPTPWENC-------------- 170

  Fly   163 QNASRVPVIGNYSDLYAMGNQSLLYNETYMNGSSLDTSAVGHVEGFQSAASEYFNRYILELNRSE 227
                  |::.|:|    ..:.|.|..|.:.                       |..|...|..|:
  Rat   171 ------PLVKNFS----TSDISCLRTEPHQ-----------------------FFWYHTVLRASD 202

  Fly   228 GIHD-LGAIKWDMALCLLIVYLICYFSLWKGISTSGKVVWFTALFPYAVLLILLIRGLTLPGSFL 291
            .|.: :..:..::.|||...:...|.::...|..|..::.|:.|||..:|.........:.|...
  Rat   203 QIEEGIEVLVLNVTLCLFATWFFLYITMVTRIKISVLMMIFSILFPNVLLFCFFTHIFFVKGVRD 267

  Fly   292 GIQYYLTPNFSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYHNNVYKDALLTSFINSATS 356
            .::..:|...|.:...:.|..|...|.:|||.|.|.::.::||.....|..|.|...:.:|..||
  Rat   268 SLKRLVTTELSILASLDAWRQAGGHVLYSLGLGMGTIITFSSYQTRGENYIKWASFVAMVNLMTS 332

  Fly   357 FIAGFVIFSVLGY---------------------------------------------------- 369
            .::..|||.:||:                                                    
  Rat   333 LLSSSVIFLMLGFWIENSGTPCVESNVSNLLSLIANGVLPQVAWPPKDIIHRSPLEYLDWISQLP 397

  Fly   370 ------MAH-TLGVRI---EDVATEGPGLVFVVYPAAIATMPASTFWALIFFMMLLTLGLDSSFG 424
                  :|| ||...|   ::...|||||.:|.:..||...|.|:|||:||||.|:.:||.:...
  Rat   398 KNIRNEVAHFTLPCSILVQKEKFMEGPGLAYVAFSQAITLFPGSSFWAIIFFMSLVIMGLGTMTT 462

  Fly   425 GSEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVFF 489
            ..|.|..:|......::::.:|....:....|:..|...::.|.|...|.|.:.....:::.|.|
  Rat   463 LVEGIALSLQKSISTLEKHPKLVPVIICLGGFLGSLVFSSRPGSYVVFLFDDHLVPMVLIMIVAF 527

  Fly   490 EAIAVSWIYGTNRFSEDIRDMIGFPPGRYWQVCWRFVA-PIFLLFITVYGLIGY--EPLTYADYV 551
            :.::::|:||..||..::...:|......:...|.:|. |..|:.:|:|.|..|  |.|:|.   
  Rat   528 QNLSLAWVYGIKRFRAEMFGQLGRLVWAPFTFLWSYVTLPTLLVLLTIYFLNLYFSESLSYV--- 589

  Fly   552 YPSWAN-------------ALGWCIAGSSVVMIP 572
              ||.|             ||||....|.:.::|
  Rat   590 --SWNNSMSQEVKQPYQRIALGWVTFLSVLALLP 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DATNP_001261026.1 SLC6sbd_SERT-like_u1 27..597 CDD:271405 158/619 (26%)
RGD1562492NP_001102616.1 SLC5-6-like_sbd 50..621 CDD:382020 157/617 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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