DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DAT and snf-12

DIOPT Version :10

Sequence 1:NP_001261026.1 Gene:DAT / 36849 FlyBaseID:FBgn0034136 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_509527.1 Gene:snf-12 / 181143 WormBaseID:WBGene00004911 Length:1022 Species:Caenorhabditis elegans


Alignment Length:656 Identity:187/656 - (28%)
Similarity:322/656 - (49%) Gaps:107/656 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SDERETWSGKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYGIMLVVGGIPLFYMELALG 88
            :|.||.|..:.||.||.:||.|.:.:..|||...|::|||.|.:||...|:..|:||.::.|:||
 Worm   154 NDRRELWRTQKDFFLSCLGFMVGVGHTMRFPAKVYQHGGGVFFIPYLFSLIFFGLPLVFLHLSLG 218

  Fly    89 QHNRKGAITCWGRLVPLFKGIGYAVVLIAFYVDFYYNVIIAWSLRFFFAS-----FTNSLPWTSC 148
            |:..:.|.|.:.||:|:..|:|:|:|:||..|..|||:|:||::.:||.|     ..:.|||.:|
 Worm   219 QYTGQAANTAFQRLMPIGSGVGWALVVIAIPVAVYYNIIVAWAIHYFFQSAKGLLLGDELPWETC 283

  Fly   149 NNIWNTPN--CRPFESQNASRVPVIGNYSDLYAMGNQSLLYNETYMNGSSLDTSAVGHVEGFQSA 211
            .:.|...|  |               |..:|::..|               .|:::       :|
 Worm   284 RDEWQLDNRCC---------------NLHNLHSCFN---------------STNSI-------TA 311

  Fly   212 ASEYFNRYILELNRSEGIHDLGAIKWDMALCLLIVYLICYFSLWKGISTSGKVVWFTALFPYAVL 276
            ...:|:..:|.|: :.|...||.::..:.|.|...:|:.:|.::||:.:..:.:..||..||.:|
 Worm   312 PEAFFHSEVLSLS-TFGDFALGPLQSHLVLSLAAAWLLVFFGVFKGLGSIAQTMNVTATVPYLLL 375

  Fly   277 LILLIRGLTLPGSFLGIQYYLTPNFSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYHNNV 341
            .|||:||::|||:..|:.:..|.:.:.::|.::|..||.|||:.||...|.|::.|::::|.||:
 Worm   376 SILLLRGISLPGANKGLTFLFTVDSTKLWKWQIWKSAAEQVFYELGIDAGPLISMAAFSRYRNNI 440

  Fly   342 YKDALLTSFINSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGP-GLVFVVYPAAIATMPASTF 405
            |:|::|...:::.||.::|.||||.:|::|......:.||....| .|.|.|||...:.|.....
 Worm   441 YRDSVLLVIMDALTSCLSGMVIFSFVGFIASESNSNVNDVLKHDPLYLSFTVYPGVTSFMYWGGL 505

  Fly   406 WALIFFMMLLTLGLDSSFGGSEAIITALSDEFP---KIKRNR---ELFVAGLFSLYFVVGLASCT 464
            ||.:||.||:...:|:.|...|.|.:|..:.|.   |...||   .|.:||.|     :||..|.
 Worm   506 WATLFFGMLVLAAIDAEFAWLEMIASAFMNHFSMKNKAVENRLLAFLCLAGFF-----LGLPLCA 565

  Fly   465 QGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTNRFSEDIRDMIGFP--------------- 514
            |||.:.||.::...|.::...........|.::||.:.:..||..|:..|               
 Worm   566 QGGIFVFHAIENLNANWNSFSLALLSVAIVCYVYGIDNYLTDISAMLRVPRIQISKATRLKEKLI 630

  Fly   515 ----PGRYW---QVCWRFVAPIFLLFITVYGLIGYEPLTYADYVYPSWANALGWCIAGSSVVMIP 572
                ||..:   .:|  |:.|:.|..:.|..::||:.:::|....|.....:.|.:....::::|
 Worm   631 YFFGPGGIYIKFSLC--FICPVILTVLLVASVLGYQRISFAGRPIPIDYEIVAWIVMIGPLLVVP 693

  Fly   573 AVAIFKL--LSTPGS-LRQRFTILTTPWRDQQSMAMVLNGVTTEVTVVRLTDTETAKEPVDVXVR 634
            .||..::  :...|. |:..|.  |:.||:.|                     :.:.||.|:.:|
 Worm   694 LVAFMQIRQIRNEGKLLKSLFD--TSEWRESQ---------------------DDSLEPKDLYMR 735

  Fly   635 PVARFQ 640
            ...:|:
 Worm   736 QSGKFE 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DATNP_001261026.1 SLC6sbd_SERT-like_u1 27..597 CDD:271405 178/608 (29%)
snf-12NP_509527.1 SLC6sbd 158..660 CDD:271359 165/546 (30%)

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