DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DAT and snf-12

DIOPT Version :9

Sequence 1:NP_001261026.1 Gene:DAT / 36849 FlyBaseID:FBgn0034136 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_509527.1 Gene:snf-12 / 181143 WormBaseID:WBGene00004911 Length:1022 Species:Caenorhabditis elegans


Alignment Length:656 Identity:187/656 - (28%)
Similarity:322/656 - (49%) Gaps:107/656 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SDERETWSGKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYGIMLVVGGIPLFYMELALG 88
            :|.||.|..:.||.||.:||.|.:.:..|||...|::|||.|.:||...|:..|:||.::.|:||
 Worm   154 NDRRELWRTQKDFFLSCLGFMVGVGHTMRFPAKVYQHGGGVFFIPYLFSLIFFGLPLVFLHLSLG 218

  Fly    89 QHNRKGAITCWGRLVPLFKGIGYAVVLIAFYVDFYYNVIIAWSLRFFFAS-----FTNSLPWTSC 148
            |:..:.|.|.:.||:|:..|:|:|:|:||..|..|||:|:||::.:||.|     ..:.|||.:|
 Worm   219 QYTGQAANTAFQRLMPIGSGVGWALVVIAIPVAVYYNIIVAWAIHYFFQSAKGLLLGDELPWETC 283

  Fly   149 NNIWNTPN--CRPFESQNASRVPVIGNYSDLYAMGNQSLLYNETYMNGSSLDTSAVGHVEGFQSA 211
            .:.|...|  |               |..:|::..|               .|:::       :|
 Worm   284 RDEWQLDNRCC---------------NLHNLHSCFN---------------STNSI-------TA 311

  Fly   212 ASEYFNRYILELNRSEGIHDLGAIKWDMALCLLIVYLICYFSLWKGISTSGKVVWFTALFPYAVL 276
            ...:|:..:|.|: :.|...||.::..:.|.|...:|:.:|.::||:.:..:.:..||..||.:|
 Worm   312 PEAFFHSEVLSLS-TFGDFALGPLQSHLVLSLAAAWLLVFFGVFKGLGSIAQTMNVTATVPYLLL 375

  Fly   277 LILLIRGLTLPGSFLGIQYYLTPNFSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYHNNV 341
            .|||:||::|||:..|:.:..|.:.:.::|.::|..||.|||:.||...|.|::.|::::|.||:
 Worm   376 SILLLRGISLPGANKGLTFLFTVDSTKLWKWQIWKSAAEQVFYELGIDAGPLISMAAFSRYRNNI 440

  Fly   342 YKDALLTSFINSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGP-GLVFVVYPAAIATMPASTF 405
            |:|::|...:::.||.::|.||||.:|::|......:.||....| .|.|.|||...:.|.....
 Worm   441 YRDSVLLVIMDALTSCLSGMVIFSFVGFIASESNSNVNDVLKHDPLYLSFTVYPGVTSFMYWGGL 505

  Fly   406 WALIFFMMLLTLGLDSSFGGSEAIITALSDEFP---KIKRNR---ELFVAGLFSLYFVVGLASCT 464
            ||.:||.||:...:|:.|...|.|.:|..:.|.   |...||   .|.:||.|     :||..|.
 Worm   506 WATLFFGMLVLAAIDAEFAWLEMIASAFMNHFSMKNKAVENRLLAFLCLAGFF-----LGLPLCA 565

  Fly   465 QGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTNRFSEDIRDMIGFP--------------- 514
            |||.:.||.::...|.::...........|.::||.:.:..||..|:..|               
 Worm   566 QGGIFVFHAIENLNANWNSFSLALLSVAIVCYVYGIDNYLTDISAMLRVPRIQISKATRLKEKLI 630

  Fly   515 ----PGRYW---QVCWRFVAPIFLLFITVYGLIGYEPLTYADYVYPSWANALGWCIAGSSVVMIP 572
                ||..:   .:|  |:.|:.|..:.|..::||:.:::|....|.....:.|.:....::::|
 Worm   631 YFFGPGGIYIKFSLC--FICPVILTVLLVASVLGYQRISFAGRPIPIDYEIVAWIVMIGPLLVVP 693

  Fly   573 AVAIFKL--LSTPGS-LRQRFTILTTPWRDQQSMAMVLNGVTTEVTVVRLTDTETAKEPVDVXVR 634
            .||..::  :...|. |:..|.  |:.||:.|                     :.:.||.|:.:|
 Worm   694 LVAFMQIRQIRNEGKLLKSLFD--TSEWRESQ---------------------DDSLEPKDLYMR 735

  Fly   635 PVARFQ 640
            ...:|:
 Worm   736 QSGKFE 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DATNP_001261026.1 SLC6sbd_SERT-like_u1 27..597 CDD:271405 178/608 (29%)
snf-12NP_509527.1 SLC6sbd 158..660 CDD:271359 165/546 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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