DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DAT and snf-7

DIOPT Version :9

Sequence 1:NP_001261026.1 Gene:DAT / 36849 FlyBaseID:FBgn0034136 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_499702.2 Gene:snf-7 / 176723 WormBaseID:WBGene00004906 Length:705 Species:Caenorhabditis elegans


Alignment Length:642 Identity:199/642 - (30%)
Similarity:318/642 - (49%) Gaps:69/642 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPT-GHISKSKTPTPHDNDNNSISD-------ERETWSGKVDFLLSVIGFAVDLANVWRFPYLCY 58
            :|| |.:...|.||..||...:..:       :|:.:.| ::..||.:|.||.|.|:||||...|
 Worm    33 APTKGPVQPQKKPTTVDNGRRAYRNQVVVENVDRQAFRG-IESFLSSLGQAVGLGNIWRFPTTAY 96

  Fly    59 KNGGGAFLVPYGIMLVVGGIPLFYMELALGQHNRKGAITCWGRLVPLFKGIGYAVVLIAFYVDFY 123
            ||||.:||:.|.:..::..:|..:||.||||:..|.....:.|::|:.:|:|:...|:...:..|
 Worm    97 KNGGLSFLIAYVVCGILFAVPAIHMEFALGQYAAKSPPAAFRRMMPILEGVGWMTCLVGAIIGVY 161

  Fly   124 YNVIIAWSLRFFFASFTNSLPWTSCNNIWNTPNCRPFESQNASRVPVIGNYSDLYA--MGNQSLL 186
            |.::|:|.:.:.| :...:...:.|||.||         :|.|.:...|....|.:  |.|.||:
 Worm   162 YMIVISWIVLYLF-NIIYATKISKCNNDWN---------KNRSTICYEGVKQKLCSGYMLNSSLV 216

  Fly   187 YNETYMNGSSLDTSAVGHVEG-FQSAAS--------EYFNRYILELNRSEGIHDLGAIKWDMALC 242
            ......|.|.  .|.:.:::| .|:|.:        ::|..::::  .|.|..|..:|...|...
 Worm   217 MTNLTRNASV--HSKMMYIDGKCQNATNMKLAVGTEQFFTNFVVK--PSTGFTDFNSINVPMLAA 277

  Fly   243 LLIVYLICYFSLWKGISTSGKVVWFTALFPYAVLLILLIRGLTLPGSFLGIQYYL--TPN----- 300
            :.:.::|...||.:|:...||:.::|.|.|||:::.|:||||||.|:..|:.:..  .||     
 Worm   278 VAVCWVIAIISLIRGMKAIGKLSYYTVLLPYAIIIALMIRGLTLEGASTGLHFLFWGKPNEYGHY 342

  Fly   301 -FSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYHNNVYKDALLTSFINSATSFIAGFVIF 364
             |:.:|..:||:.|..|:.|||..|.|.|:...||||...|.|:||.|....::..|.:.|..:|
 Worm   343 DFAGLYDPDVWIAALMQMCFSLSIGQGGLMNIGSYNKKTYNWYRDAYLVVLCDTLMSLLGGTAVF 407

  Fly   365 SVLGYMAHTLGVRI------EDVATEGPGLVFVVYPAAIATMPASTFWALIFFMMLLTLGLDSSF 423
            |.||::|....:.|      .:|..||..|.|:||..|||.||....|..:||:||..||:.:..
 Worm   408 STLGFLAEQRNISISNPKGFNEVVQEGHALAFIVYTEAIAQMPYPFLWYALFFVMLFLLGISTEI 472

  Fly   424 GGSEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVF 488
            ...|.:.:.|:|.|..::::|.:.|..:.:.:|::||...:..|||:|.|.|.|:||.|..:...
 Worm   473 VIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVMTSDAGFYWFDLYDEYSAGVSATIGTA 537

  Fly   489 FEAIAVSWIYGTNRFSEDIRDMIGFP---------PGRY-WQVCWRFVAPIFLLFITVYGLIGYE 543
            ...:.|.|.||.:.|..|||:|...|         ||.| |.:.||||.||..|.| ::..|..:
 Worm   538 IMCLTVCWCYGLDNFRADIREMWEEPESRLDKYLGPGAYVWTIVWRFVTPICCLVI-MFAWIWDK 601

  Fly   544 --PLTYADYVYPSWANALGWCIAGSSVVMIPAVAIFKLLSTPGSLRQRFTILTTPWR 598
              |.......||...:|.||.:|.....::|..|.|.:        :||..|..|.|
 Worm   602 KYPFKGDSKKYPPVFDAFGWFVAALPFFVVPVFAGFAI--------KRFKDLNIPIR 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DATNP_001261026.1 SLC6sbd_SERT-like_u1 27..597 CDD:271405 189/606 (31%)
snf-7NP_499702.2 SLC6sbd 70..598 CDD:271359 174/543 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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