DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn2 and Sntg1

DIOPT Version :9

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_001277322.1 Gene:Sntg1 / 71096 MGIID:1918346 Length:517 Species:Mus musculus


Alignment Length:496 Identity:197/496 - (39%)
Similarity:295/496 - (59%) Gaps:12/496 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KVRTGMVHVSDGKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGGL 89
            :.:||:..:.||...|..:||:|..:||.||:.:|:..|     |.|..|.||.|.|.||..||.
Mouse     9 ETKTGVCLLQDGNQEPFKVRLHLARDLLMLQEQDVLCVS-----GEPFYSGERTVTIRRQTVGGF 68

  Fly    90 GLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVV 154
            ||||||||||.:|::||:|.|:|.|:::|.||:||||:::||..:..|.|::.|.:|||||:.|.
Mouse    69 GLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVT 133

  Fly   155 LTVKHYRAATPFLQKQLTKD---TPDSDNDVTCAELKADEGYKSSVN-SGTISRSCSR-PMSICS 214
            |||...:.|..||:..:.:|   .|...:..|.:.| .|.|...:.: :.|.:.|||. |.|...
Mouse   134 LTVSFLKRAPAFLKLPVNEDCACAPSDQSSGTSSPL-CDSGLHLNYHPNNTDTLSCSSWPTSPGL 197

  Fly   215 EPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQWLKLITDN 279
            ..||||.|:..:||:.|..::|:.|||..|||||:|..::|:.:|::.|........||:.|..|
Mouse   198 RWEKRWCDLRLIPLLHARFSQYVPGTDLSRQNAFQVVAVDGVCSGILQCLSAEDCMDWLQAIASN 262

  Fly   280 VVGLTHLQMKLYNRNFAVGERIEYMGWVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVA 344
            :..||...:|..||||.|.::|.||||. |.....::..:.|.|.||.|:|:.:..|.:||:...
Mouse   263 ISNLTKHNIKKINRNFPVNQQIVYMGWC-EAREQESLQDRVYTPVFLALRGSCLYRFLSPPVTTW 326

  Fly   345 GISKALVVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNAAIVT 409
            ..::|...:.|.:.|.:::|:|:.:|.|:|||.:||...|..|.|||...:|.:.|.::..|...
Mouse   327 DWTRAEKTFSVCEIMCKVLKDSDLLDRRKHCFTMQSECGEDLYFSVELESDLAQWERAFQTATFL 391

  Fly   410 SVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFSQLRGSSDDGKSKLKLHFQD 474
            .|.::..||:|........|||:|:..||...:.|..|.:|:||||||:|||||||||:|..||:
Mouse   392 EVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQN 456

  Fly   475 HDSRAIETKELECQVLQSLLFCMHAFLTAKVASVDPAFLSS 515
            .|::.||.||||...|.::|.|:|:|..||||.:||.||.:
Mouse   457 PDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGN 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_signaling 76..158 CDD:238492 45/81 (56%)
PH 301..407 CDD:214574 34/105 (32%)
Sntg1NP_001277322.1 PDZ_signaling 55..136 CDD:238492 44/80 (55%)
PH 191..264 CDD:214574 27/72 (38%)
PH 284..389 CDD:214574 34/105 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834112
Domainoid 1 1.000 227 1.000 Domainoid score I2495
eggNOG 1 0.900 - - E1_KOG3549
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56834
Inparanoid 1 1.050 346 1.000 Inparanoid score I2297
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46473
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003391
OrthoInspector 1 1.000 - - otm42643
orthoMCL 1 0.900 - - OOG6_106123
Panther 1 1.100 - - O PTHR10554
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4001
SonicParanoid 1 1.000 - - X2288
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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