DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn2 and Sntg1

DIOPT Version :10

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_063144246.1 Gene:Sntg1 / 500394 RGDID:1560290 Length:560 Species:Rattus norvegicus


Alignment Length:503 Identity:197/503 - (39%)
Similarity:294/503 - (58%) Gaps:26/503 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KVRTGMVHVSDGKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGGL 89
            :.:||:..:.||...|..:||:|..:||.||:.:|:..|     |.|..|.||.|.|.||..||.
  Rat    51 ETKTGVCLLQDGNQEPFKVRLHLARDLLMLQEQDVLCVS-----GEPFYSGERTVTIRRQTVGGF 110

  Fly    90 GLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVV 154
            ||||||||||.:|:::|:|.|:|.|:::|.||:||||:::||..:..|.|::.|.:|||||:.|.
  Rat   111 GLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVT 175

  Fly   155 LTVKHYRAATPFLQKQLTKD---TPDSDNDVTCAELKADEGYKSSVN-SGTISRSCSR-PMSICS 214
            |||...:.|..||:..|.:|   .|...:..|.:.| .|.|...:.: :.|.:.|||. |.|...
  Rat   176 LTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPL-CDSGLHLNYHPNNTDTLSCSSWPTSPGL 239

  Fly   215 EPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQWLKLITDN 279
            ..||||.|:..:||:.|..::|:.|||..|||||:|..::|:.:|::.|........||:.|..|
  Rat   240 RWEKRWCDLRLIPLLHARFSQYVPGTDLSRQNAFQVVAVDGVCSGILQCLSAEDCMDWLQAIATN 304

  Fly   280 VVGLTHLQMKLYNRNFAVGERIEYMGWVNEGVINNNISWQS-------YKPRFLLLKGTEVMLFE 337
            :..||...:|..||||.|.::|.||||..        :|:.       |.|.||.|:|:.:..|.
  Rat   305 ISNLTKHNIKKINRNFPVNQQIVYMGWCE--------AWEQESLQDRVYTPVFLALRGSCLYRFL 361

  Fly   338 TPPLNVAGISKALVVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENS 402
            :||:.....::|...:.|.:.|.:::|:|:.:|.|:|||.:||...|..|.|||...:|.:.|.:
  Rat   362 SPPVTTWDWTRAEKTFSVCEIMCKVLKDSDLLDRRKHCFTMQSECGEDLYFSVELESDLAQWERA 426

  Fly   403 WNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFSQLRGSSDDGKSK 467
            :..|....|.::..||:|........|||:|:..||...:.|..|.:|:||||||:|||||||||
  Rat   427 FQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSK 491

  Fly   468 LKLHFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKVASVDPAFLSS 515
            :|..||:.|::.||.||||...|.::|.|:|:|..||||.:||.||.:
  Rat   492 IKFLFQNQDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGN 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_syntrophin-like 77..159 CDD:467262 44/81 (54%)
PH 301..407 CDD:214574 34/112 (30%)
Sntg1XP_063144246.1 None

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