DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn2 and Sntg2

DIOPT Version :10

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_006515171.1 Gene:Sntg2 / 268534 MGIID:1919541 Length:572 Species:Mus musculus


Alignment Length:484 Identity:180/484 - (37%)
Similarity:278/484 - (57%) Gaps:36/484 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KVRTGMVHVSD-GKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGG 88
            :.:|.:..:.| |......:||.||.|:|::||.:||    |....|| .:..|.|.:.||..||
Mouse    24 RTKTALALLYDEGLENAYDVRLKLTKEVLTIQKQDVV----CIGGAPP-GANHRTVTLRRQPVGG 83

  Fly    89 LGLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIV 153
            |||||||||||.:|::||:|:||||||.|..||:|||:::|||..:....|::.|::||||||.|
Mouse    84 LGLSIKGGAEHGVPVVISKIFKDQAADQTEMLFIGDAVLQVNGINVENATHEEVVHLLRNAGDDV 148

  Fly   154 VLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEG-YKSSVNSGTISRSCSRPMSICSEP- 216
            .:||::.|.|..||:..|....|.||:....:....|.| :.:...|.|...|.|.|  |.:|| 
Mouse   149 TITVEYLREAPSFLKLPLGSPGPSSDHSSRASSPLFDSGLHLNGHCSHTAPSSPSSP--IANEPK 211

  Fly   217 -EKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQWLKLITDNV 280
             ||||.|.::|||.||.::||..||:|||.:|.||..|:|.||||:........:.||:.|:.|:
Mouse   212 YEKRWLDTLSVPLSMARISRYKAGTEKLRSSALEVLALDGASTGVLQFSTAQDCADWLRSISTNI 276

  Fly   281 VGLTHLQMKLYNRNFAVGERIEYMGWVNE---GVINNNISWQSYKPRFLLLKGTEVMLFETPPLN 342
            ..||...||:.|:..:..:::.:||||||   |..|:    |:::|:||.|:|:...:|..||::
Mouse   277 SDLTLQHMKMANKCCSPCDQVVHMGWVNERLQGADNS----QNFRPKFLALRGSSFYIFGAPPVS 337

  Fly   343 VAGISKALVVYKVYQTMFRI------------------VKESETVDSRQHCFLLQSSGHEPRYLS 389
            .....:|...|.:.:.:|::                  :::.:..|.|.:||.:.::..:....|
Mouse   338 TLDWGRAERAYNLCEVLFKVHKFWLSDNYWLQANLYLGLQDFDCEDPRSYCFSVLANHGKSHIFS 402

  Fly   390 VETRQELLRIENSWNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKF 454
            ||...||...|.::..|....|.:.|.||:..|..|::...|:|:..||:..:|.....:|::||
Mouse   403 VELGSELAVWEKAFQRATFMEVQRTGSKTYLCSWQGETLCFTVDFALGFTCFDGKTKNVLWRFKF 467

  Fly   455 SQLRGSSDDGKSKLKLHFQDHDSRAIETK 483
            |||:|||||||:::||.||:.|::.||||
Mouse   468 SQLKGSSDDGKTRVKLLFQNLDTKQIETK 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_syntrophin-like 77..159 CDD:467262 47/81 (58%)
PH 301..407 CDD:214574 30/126 (24%)
Sntg2XP_006515171.1 PDZ_syntrophin-like 72..154 CDD:467262 47/81 (58%)

Return to query results.
Submit another query.