DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn2 and Sntg2

DIOPT Version :9

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_006515171.1 Gene:Sntg2 / 268534 MGIID:1919541 Length:572 Species:Mus musculus


Alignment Length:484 Identity:180/484 - (37%)
Similarity:278/484 - (57%) Gaps:36/484 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KVRTGMVHVSD-GKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGG 88
            :.:|.:..:.| |......:||.||.|:|::||.:||    |....|| .:..|.|.:.||..||
Mouse    24 RTKTALALLYDEGLENAYDVRLKLTKEVLTIQKQDVV----CIGGAPP-GANHRTVTLRRQPVGG 83

  Fly    89 LGLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIV 153
            |||||||||||.:|::||:|:||||||.|..||:|||:::|||..:....|::.|::||||||.|
Mouse    84 LGLSIKGGAEHGVPVVISKIFKDQAADQTEMLFIGDAVLQVNGINVENATHEEVVHLLRNAGDDV 148

  Fly   154 VLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEG-YKSSVNSGTISRSCSRPMSICSEP- 216
            .:||::.|.|..||:..|....|.||:....:....|.| :.:...|.|...|.|.|  |.:|| 
Mouse   149 TITVEYLREAPSFLKLPLGSPGPSSDHSSRASSPLFDSGLHLNGHCSHTAPSSPSSP--IANEPK 211

  Fly   217 -EKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQWLKLITDNV 280
             ||||.|.::|||.||.::||..||:|||.:|.||..|:|.||||:........:.||:.|:.|:
Mouse   212 YEKRWLDTLSVPLSMARISRYKAGTEKLRSSALEVLALDGASTGVLQFSTAQDCADWLRSISTNI 276

  Fly   281 VGLTHLQMKLYNRNFAVGERIEYMGWVNE---GVINNNISWQSYKPRFLLLKGTEVMLFETPPLN 342
            ..||...||:.|:..:..:::.:||||||   |..|:    |:::|:||.|:|:...:|..||::
Mouse   277 SDLTLQHMKMANKCCSPCDQVVHMGWVNERLQGADNS----QNFRPKFLALRGSSFYIFGAPPVS 337

  Fly   343 VAGISKALVVYKVYQTMFRI------------------VKESETVDSRQHCFLLQSSGHEPRYLS 389
            .....:|...|.:.:.:|::                  :::.:..|.|.:||.:.::..:....|
Mouse   338 TLDWGRAERAYNLCEVLFKVHKFWLSDNYWLQANLYLGLQDFDCEDPRSYCFSVLANHGKSHIFS 402

  Fly   390 VETRQELLRIENSWNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKF 454
            ||...||...|.::..|....|.:.|.||:..|..|::...|:|:..||:..:|.....:|::||
Mouse   403 VELGSELAVWEKAFQRATFMEVQRTGSKTYLCSWQGETLCFTVDFALGFTCFDGKTKNVLWRFKF 467

  Fly   455 SQLRGSSDDGKSKLKLHFQDHDSRAIETK 483
            |||:|||||||:::||.||:.|::.||||
Mouse   468 SQLKGSSDDGKTRVKLLFQNLDTKQIETK 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_signaling 76..158 CDD:238492 46/81 (57%)
PH 301..407 CDD:214574 30/126 (24%)
Sntg2XP_006515171.1 PDZ_signaling 72..153 CDD:238492 46/80 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834113
Domainoid 1 1.000 227 1.000 Domainoid score I2495
eggNOG 1 0.900 - - E1_KOG3549
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 346 1.000 Inparanoid score I2297
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46473
OrthoDB 1 1.010 - - D1103724at2759
OrthoFinder 1 1.000 - - FOG0003391
OrthoInspector 1 1.000 - - otm42643
orthoMCL 1 0.900 - - OOG6_106123
Panther 1 1.100 - - LDO PTHR10554
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4001
SonicParanoid 1 1.000 - - X2288
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.800

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