DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn2 and stn-2

DIOPT Version :9

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_001024610.1 Gene:stn-2 / 181029 WormBaseID:WBGene00017866 Length:515 Species:Caenorhabditis elegans


Alignment Length:518 Identity:181/518 - (34%)
Similarity:291/518 - (56%) Gaps:37/518 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 KLDQNLK-VRTGMVHVSDGKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKE------ 76
            |...||. |..|:|.:|||.:.....||.|:.:.|.:|.::..|       ..|.|:||      
 Worm     5 KSHHNLDVVHHGIVLISDGNATSRSSRLLLSKDELCIQVIDDGT-------AEPEEAKETFLENA 62

  Fly    77 -RMVQITRQKQGGLGLSIKGGAEH--KLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACP 138
             |.|.|.::...|.|||||||:|:  .:||:||:|:|...||..|:||:||||::|||..|....
 Worm    63 TRQVVIVKKPDSGFGLSIKGGSENAQNMPIVISKIFKGLPADECGELFIGDAIVEVNGISIEGQS 127

  Fly   139 HDDAVNILRNAGDIVVLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSGTIS 203
            ||:.||:|:::||.|.|.|:|:...||||     |.......|.|..:|......:|........
 Worm   128 HDEVVNMLKSSGDQVTLGVRHFTHMTPFL-----KPAQSLQPDGTLDQLFDGRSTRSHKAQSESR 187

  Fly   204 RSCSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAI 268
            .|.|:........||:|..:.::||.|||||||::|||.:|.|:||||.::|.|:|::||::.:.
 Worm   188 LSDSKWQQHIDGREKKWKTLTSLPLAMAYVTRYLWGTDNIRTNSFEVRAVDGRSSGIVHCEDTSA 252

  Fly   269 LSQWLKLITDNVVGLTHLQMKLYNRNFAVGERIEYMGWVNEGVINNN------ISWQSYKPRFLL 327
            |.||:..|:.:::.|....:|:.|:.....|:|.|:||||| .:|::      |.||   ||||:
 Worm   253 LEQWISHISKHILSLNQKSIKMSNKYLHQSEQISYIGWVNE-YLNDDDQEELKIRWQ---PRFLI 313

  Fly   328 LKGTEVMLFETPPLNVAGISKALVVYKVYQTMFR-IVKESETVDSRQHCFLLQSSGHEP-RYLSV 390
            |||::|..|:.||||...::|.:.:||.|....: :...|...|.|.:|||:::....| .|||.
 Worm   314 LKGSDVCFFDVPPLNSEDLNKCVYLYKCYDVAVKQVPNSSPRRDKRDNCFLIETPLQVPNHYLSF 378

  Fly   391 ETRQELLRIENSWNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFS 455
            |........|.::...:..::.::..:|||.:..|::.|:..|.:.|.||.:....:.:|||:|.
 Worm   379 EAVSAFELFEQAYYRTVYNTISQMQSRTFACNFEGRASGIVFDIKQGISLYDIPTKSYIWQYRFR 443

  Fly   456 QLRGSSDDGKSKLKLHFQDH---DSRAIETKELECQVLQSLLFCMHAFLTAKVASVDPAFLSS 515
            .|:..:||||..::|.|.|.   :|..||.|::||:.:.:::|.:|:|:.|::.|.||.:|.:
 Worm   444 DLQAVADDGKLCVQLSFNDDRSLNSDRIEVKDIECEDVVTVVFNLHSFVLARIVSTDPDYLKA 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_signaling 76..158 CDD:238492 41/90 (46%)
PH 301..407 CDD:214574 40/113 (35%)
stn-2NP_001024610.1 PDZ_signaling 63..147 CDD:238492 40/83 (48%)
PH_17 204..261 CDD:375487 27/56 (48%)
PH 304..386 CDD:365918 31/84 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157901
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56834
Inparanoid 1 1.050 312 1.000 Inparanoid score I1543
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46473
OrthoDB 1 1.010 - - D1103724at2759
OrthoFinder 1 1.000 - - FOG0003391
OrthoInspector 1 1.000 - - oto18821
orthoMCL 1 0.900 - - OOG6_106123
Panther 1 1.100 - - LDO PTHR10554
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4001
SonicParanoid 1 1.000 - - X2288
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.940

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