DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn2 and sntg1

DIOPT Version :9

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_002666738.3 Gene:sntg1 / 100330925 ZFINID:ZDB-GENE-140106-77 Length:525 Species:Danio rerio


Alignment Length:498 Identity:205/498 - (41%)
Similarity:306/498 - (61%) Gaps:12/498 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 NLKVRTGMVHVSDGKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQG 87
            |.:.:||:..:.||...|..:||:|..::|::|:.:|:..|     |.|..|.||.|.|.||..|
Zfish     7 NEETKTGIYLLQDGSEEPFNIRLHLAKDILTIQEQDVICVS-----GEPFYSSERTVTIRRQTIG 66

  Fly    88 GLGLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDI 152
            |.|||||||||||:|::||:|.|:|.|:::|.||:||.|:::||..:.:..|::.|.:|||||:.
Zfish    67 GFGLSIKGGAEHKIPVVISKISKEQKAELSGLLFIGDGILQINGINVRSYRHEEVVQVLRNAGEE 131

  Fly   153 VVLTVKHYRAATPFLQKQLTKD---TPDSDNDVTCAELKADEGYKSSVN-SGTISRSCSR-PMSI 212
            |.|||...:....||:..|.:|   .|...:..|.:.| .|.|...:.: :.|.:.|||. |||.
Zfish   132 VTLTVSFLKRTPAFLKLPLCEDCSCIPSDQSSGTSSPL-CDSGLHLNYHPNNTDTLSCSSWPMSP 195

  Fly   213 CSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQWLKLIT 277
            ....||||.|:..:||:.|.:::|:.|||..|||||:|..::|:.:|||.|......:.||:.|:
Zfish   196 GLRWEKRWVDLRLIPLLHARLSQYVPGTDICRQNAFQVIAVDGVCSGVIQCPGTDECTDWLQAIS 260

  Fly   278 DNVVGLTHLQMKLYNRNFAVGERIEYMGWVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLN 342
            .|:..||...:|..||||.|.::|.|||||:|.. .:::..:.|.|:||.|:|:.:..|..||:.
Zfish   261 ANISALTKHNVKKINRNFPVNQQIIYMGWVDEKE-QDSVQDRMYTPKFLALRGSSLFKFSAPPVT 324

  Fly   343 VAGISKALVVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNAAI 407
            ....::|...:.||:.||:|:|:||.:|.|:|||.:|:...|..:.|||...|||..|.::..|.
Zfish   325 TWDWTRAEKSFTVYEIMFKILKDSELLDKRKHCFSVQTDSGEDIFFSVELECELLLWEKAFQMAT 389

  Fly   408 VTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFSQLRGSSDDGKSKLKLHF 472
            ...|.::..||:|........|||:|:..||...:.|..|.:|:||||||:|||||||||:|..|
Zfish   390 FFEVERIQCKTYACIVDSHLMGLTIDFSMGFVCFDAASKAVLWRYKFSQLKGSSDDGKSKIKFLF 454

  Fly   473 QDHDSRAIETKELECQVLQSLLFCMHAFLTAKVASVDPAFLSS 515
            |:.|::.||.||||...|.::|.|:|||..||||.:||.|:||
Zfish   455 QNQDTKLIEAKELEFSNLFAVLHCIHAFFAAKVACLDPMFVSS 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_signaling 76..158 CDD:238492 44/81 (54%)
PH 301..407 CDD:214574 39/105 (37%)
sntg1XP_002666738.3 PDZ_signaling 55..136 CDD:238492 43/80 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576814
Domainoid 1 1.000 232 1.000 Domainoid score I2349
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56834
Inparanoid 1 1.050 347 1.000 Inparanoid score I2274
OMA 1 1.010 - - QHG46473
OrthoDB 1 1.010 - - D1103724at2759
OrthoFinder 1 1.000 - - FOG0003391
OrthoInspector 1 1.000 - - otm25679
orthoMCL 1 0.900 - - OOG6_106123
Panther 1 1.100 - - O PTHR10554
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2288
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.910

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