DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loopin-1 and AT4G30910

DIOPT Version :10

Sequence 1:NP_611134.1 Gene:loopin-1 / 36847 FlyBaseID:FBgn0259795 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001328632.1 Gene:AT4G30910 / 829215 AraportID:AT4G30910 Length:604 Species:Arabidopsis thaliana


Alignment Length:536 Identity:130/536 - (24%)
Similarity:234/536 - (43%) Gaps:84/536 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KG--VVVGVYTKDGDKPSKTT-ANAV--TLDDALGGKLLTLIRERGMDGTPGKG--LLFSGFEGE 98
            ||  :.|||..||..|.:.:. .|.:  .||..|||.|..:..|....|.||:.  |...|... 
plant    91 KGDILAVGVTEKDMAKDANSKFENPILKKLDAHLGGLLADVSAEEDFSGKPGQSTVLRLPGLGS- 154

  Fly    99 YQAVAVVGVGKQGAAYNENEELDEGMENVRVAAGTGARALQLQGMYEVHVDSMDYPEQA------ 157
             :.|.::|:||..:..:..:.|.|       |....|:|.|...:..|...|..:.:::      
plant   155 -KRVGLIGLGKSASTPSAFQSLGE-------AVAAAAKASQASSVAVVLASSESFSDESKLSSAS 211

  Fly   158 --AEGAALAVWRYNANKRKKNRIQTPKLD---MYGKGDRDAWVRGLFKAESQN----LARRLSDT 213
              |.|..|.::.   :.|.|:..:.|.|.   ..|.|........|..||..:    ..:.|.::
plant   212 DIASGTVLGLFE---DSRYKSESKKPSLKSVVFIGFGTGPELENKLKYAEHVSYGVIFTKELVNS 273

  Fly   214 PANMMTPSIFAQAA--VDALCPCGVSVEVRSMDWIEDMNLNSFLMIAKGSCEPPLLLECSYCGTT 276
            |||:::|::.|:.|  :.::....::..:...:..:::.:.|:|.:|..|..||..:...|   .
plant   274 PANVLSPAVLAEEASNLASMYSNVMTANILKEEQCKELKMGSYLAVAAASANPPHFIHLIY---K 335

  Fly   277 PEDRPV----LLLGQGLTFHSGGLCLK--PKTGMDQYRGAMAGAAVCVGVLRAAAALSLP-LNIT 334
            |...||    .|:|:||||.|||..:|  |:..::..:..:.|:|..:|..:|...:..| :.:.
plant   336 PSSGPVKTKLALVGKGLTFDSGGYNIKIGPELIIELMKIDVGGSAAVLGAAKAIGEIKPPGVEVH 400

  Fly   335 AVMPLCEHMPSGMAVKCGDVVTLLNGTT-----------------------MGIKNVDKAPVVQL 376
            .::..||:|.||..::.|||:|..||.|                       :.:.:.|....:.|
plant   401 FIVAACENMISGTGMRPGDVITASNGKTIEVSLHRFHMNSASKGSSFPLLVLQVNDTDSEGRLTL 465

  Fly   377 ADPLLYA--QATYKPKLVIDIGTVAMGVNYAVGGGASGLWTTSKSVWQNFRKSGGLTGDRVWRFP 439
            ||.|:||  |...|   ::||.|:...:..|:|...:|::|.|..:.:....:...:|:::||.|
plant   466 ADALVYACNQGVDK---IVDIATLTGEIIVALGPSMAGMYTASDELAKEVIAASQRSGEKLWRMP 527

  Fly   440 LFKYYKQIVNKNITYDLCNTGRGPASSCLAAAILHTLV-PCAEWAHLDIRGTGMTTTINPRPYLL 503
            :.:.|.:::...:. |:.|.|.....|..||..|...| ...||.|:|:.|    ...|.:    
plant   528 MEESYWEMMKSGVA-DMVNFGGRAGGSITAALFLKRFVSENVEWLHIDMAG----RVWNEK---- 583

  Fly   504 KDSMTGRPTRTVIQFM 519
            |.:.||....|:::::
plant   584 KKAATGFGVATLVEWV 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loopin-1NP_611134.1 Peptidase_M17_N 44..173 CDD:426984 34/141 (24%)
Peptidase_M17 206..514 CDD:459978 84/342 (25%)
AT4G30910NP_001328632.1 PRK00913 80..601 CDD:234863 130/536 (24%)

Return to query results.
Submit another query.