DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and Sema6b

DIOPT Version :10

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_006244410.1 Gene:Sema6b / 84609 RGDID:69278 Length:957 Species:Rattus norvegicus


Alignment Length:670 Identity:202/670 - (30%)
Similarity:324/670 - (48%) Gaps:128/670 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PLLALLLLLCSSV------------SETAADYENTWNFYYERPCCTGNDQGNNNYGKHGADHVRE 60
            |.|..||||...|            |....||.:.:      |...|:..|...    .|:...:
  Rat    81 PALLFLLLLLLRVTHGLFPDEPPPLSVAPRDYLSHY------PVFVGSGPGRLT----PAEGAED 135

  Fly    61 FNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCN-RDVINLEPTRDDVVSCVSKGKS 124
            .|    ..|...:|.   ||::|..|.:::|.|:..:|:... :..:.......|:..|..||| 
  Rat   136 LN----IQRVLRVNR---TLFIGDRDNLYQVELEPSTSTELRYQRKLTWRSNPSDIDVCRMKGK- 192

  Fly   125 QIFDCKNHVRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVGL-GIAKCPYDPL 188
            |..:|:|.|:|:...|: ..|:|||:||.||    |.||  :...:..::|..: |:|:|||||.
  Rat   193 QEGECRNFVKVLLLRDE-STLFVCGSNAFNP----ICAN--YSMDTLQLLGDNISGMARCPYDPK 250

  Fly   189 DNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKP 253
            ..:.|::.:     |:  |::.|..:|...|.||:|:        ..:....||:|:||||..:|
  Rat   251 HANVALFSD-----GM--LFTATVTDFLAIDAVIYRS--------LGDRPTLRTVKHDSKWFKEP 300

  Fly   254 NFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGK-NLLAHNWATYLKARLNCSI 317
            .||.:.:.|.:|||||||.|:|:....|.|.||:|||||.||||. .:|...|.::||||||||:
  Rat   301 YFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSV 365

  Fly   318 SGEFPFYFNEIQSVYQLPSDKSR--FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSN 380
            .|:..||||.:|:|..:.|...|  ..|.|:|.:|.:.|||||:|.:|::.|.|.|:|:||.|..
  Rat   366 PGDSHFYFNVLQAVTGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAAVFEGRFREQKSPE 430

  Fly   381 SAWLPVLNSRVPEPRPGTCV------NDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLV 439
            |.|.||...:||.||||.|.      |.::.|||.:|||:::|||||:||....::| :..|.|:
  Rat   431 SIWTPVPEDQVPRPRPGCCAAPGMQYNASNALPDEILNFVKTHPLMDEAVPSLGHSP-WIVRTLI 494

  Fly   440 FTKLVVDKIRIDI-----LNQEYIVYYVGTNLGRIYKIVQYYRNGESLSK------LLDIFEV-A 492
            ..:|.  ::.:|:     .||  .:.::|:.:|.:.|.:  .:...|:|.      .|:.||. .
  Rat   495 RHQLT--RVAVDVGAGPWGNQ--TIVFLGSEVGTVLKFL--VKPNASVSGTTGPSIFLEEFETYR 553

  Fly   493 PN------------EAIQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFR-CV--RDPYCG 542
            |:            :.:..:|:......|.......:.::.:|.| :.|..|.: |:  :|||||
  Rat   554 PDRCGRSSSAGEWGQRLLSLELDAASGGLLAAFPRCVVRVPVARC-QLYSGCMKNCIGSQDPYCG 617

  Fly   543 WDKEAN-------TCRPYELDLLQDVAN-ETSDICD-------------SSVLKKKIVVTYGQSV 586
            |..:.:       |...:|    |||:. .||.:.|             :.::...::||..   
  Rat   618 WAPDGSCIFLRPGTSATFE----QDVSGASTSGLGDCTGLLRASLSDDRAGLVSVNLLVTSS--- 675

  Fly   587 HLGCFVKIPEVLKNEQVTWY 606
             :..|| :..|:....|.|:
  Rat   676 -VAAFV-VGAVVSGFSVGWF 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 161/491 (33%)
PSI 527..>550 CDD:396154 9/32 (28%)
Ig_Semaphorin_C 573..668 CDD:409368 7/34 (21%)
Ig strand A 573..579 CDD:409368 0/5 (0%)
Ig strand B 583..591 CDD:409368 0/7 (0%)
Ig strand C 601..607 CDD:409368 2/6 (33%)
Ig strand C' 609..612 CDD:409368
Ig strand D 622..626 CDD:409368
Ig strand E 630..637 CDD:409368
Ig strand F 643..652 CDD:409368
Ig strand G 655..668 CDD:409368
Sema6bXP_006244410.1 Sema_6B 128..596 CDD:200528 163/508 (32%)
PSI 597..>626 CDD:396154 10/29 (34%)
PHA03247 <768..955 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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