DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2a and sema4ab

DIOPT Version :10

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_005170153.1 Gene:sema4ab / 571290 ZFINID:ZDB-GENE-060503-363 Length:836 Species:Danio rerio


Alignment Length:618 Identity:170/618 - (27%)
Similarity:281/618 - (45%) Gaps:91/618 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 TFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCN-RDVINLEPTRDDVVSCVSKGKSQIFDCKNHV 133
            |..::.|..||:|||.|.:..:   |||.::.. ::.::..|:..|...|..|||.:: ||.|.|
Zfish    51 TLLLSNDEGTLFVGARDTILSI---NISQTDMTLKEKLDWSPSEKDFNDCSMKGKLKM-DCHNFV 111

  Fly   134 RVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVG------LGIAKCPYDPLDNST 192
            ||:|.:: ...:|.|||.|.:|:  .||.|     ...:.:..|      .|..:|||||...::
Zfish   112 RVLQVLN-STHMYACGTFAFSPR--CIYIN-----SQTFTMVTGPSGKPEEGRGRCPYDPYQKNS 168

  Fly   193 AIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNFVG 257
            ||.|:.       .||:||.::|.....||.|   :.:....::.|...||    .||:.|.|:.
Zfish   169 AITVDG-------ELYTGTVSDFRGTRPVISR---HLSEGSHVDLKLDDTL----GWLEDPTFIS 219

  Fly   258 SFDI--GEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARLNCSISGE 320
            |..|  .|.|||||.|...||....|...||:|:||..||||:..|...|.|:.||:|.|....|
Zfish   220 STYIHSEEKVYFFFSEIGKEYDFIDKFTVSRVAQVCTSDVGGQRTLQKRWTTFAKAQLLCQADQE 284

  Fly   321 FPFYFNEIQSVYQL------PSDKSRFFATFTTSTNGLIG-SAVCSFHINEIQAAFNGKFKEQSS 378
            .|  :|.:|.|..|      ..|::.|:..||:.....:| ||||:|.:.:|:..|.|::|..:.
Zfish   285 LP--YNVLQDVISLSPPEGASEDETLFYGIFTSQWRVNLGRSAVCAFSLKDIKKVFTGRYKVLNR 347

  Fly   379 SNSAWLPVLNSRVPE--PRPGTCVNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLVFT 441
            ....|    ::||.|  ..||.|  ...|..|..|.|::.:.|.||:|...:........|..::
Zfish   348 DTLKW----STRVQEQMANPGEC--GLHNASDNTLRFVKDNFLADKSVLPVNQGLTVVSPDKSYS 406

  Fly   442 KLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSKLLDIFEVAPNEAIQVMEISQTR 506
            .:...::: ....:.|.|.|:.|..|.::|.| ..:.|..:.:.:.:|.  ..:.::.:.:|.::
Zfish   407 NIAAQRVQ-GARGKYYTVLYLLTESGFLHKTV-LLKKGAHIIEEIQVFH--QPQMVKSLLLSVSK 467

  Fly   507 KSLYIGTDHRIKQIDLAMCNRRYDNCFRCV--RDPYCGWDKEANTCR---PYELDLLQDV-ANET 565
            .::.||:...:..:.::.|: .|.:|..||  |||:||||.....|:   ..:..|.||| ..:.
Zfish   468 GAVLIGSSEGLLSVPVSNCS-HYRSCAECVLARDPFCGWDLSQRVCKLITTSQNQLAQDVDEGKV 531

  Fly   566 SDICDSSVLKKK----------------IVVTYGQSVHLGCFVKIPEVLKNEQVTWYHHSKDKGR 614
            |:.|.|..|:.:                :.|:..:.::|.|    ||.....:..|       .|
Zfish   532 SEQCSSVNLRSRSGQPQNTQTLCPPGEVLSVSLNEVINLQC----PEASNLAKCHW-------ER 585

  Fly   615 YEIRYSPTKYIETTERGLVVVSVNEADGGRYDC 647
            ...:.||..:|::....|..|: ..:..|.|.|
Zfish   586 LNSQLSPKIFIQSVNGSLSFVA-TPSTLGHYLC 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 134/470 (29%)
PSI 527..>550 CDD:396154 11/24 (46%)
Ig_Semaphorin_C 573..668 CDD:409368 16/91 (18%)
Ig strand A 573..579 CDD:409368 1/21 (5%)
Ig strand B 583..591 CDD:409368 1/7 (14%)
Ig strand C 601..607 CDD:409368 1/5 (20%)
Ig strand C' 609..612 CDD:409368 0/2 (0%)
Ig strand D 622..626 CDD:409368 0/3 (0%)
Ig strand E 630..637 CDD:409368 2/6 (33%)
Ig strand F 643..652 CDD:409368 3/5 (60%)
Ig strand G 655..668 CDD:409368
sema4abXP_005170153.1 Sema_4 41..484 CDD:200501 134/470 (29%)
PSI 485..>512 CDD:214655 12/27 (44%)
Ig 555..631 CDD:472250 15/75 (20%)
Ig strand B 568..572 CDD:409353 1/3 (33%)
Ig strand C 580..585 CDD:409353 1/11 (9%)
Ig strand E 600..604 CDD:409353 0/3 (0%)
Ig strand F 614..619 CDD:409353 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.