DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and SEMA3G

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_024309410.1 Gene:SEMA3G / 56920 HGNCID:30400 Length:800 Species:Homo sapiens


Alignment Length:645 Identity:190/645 - (29%)
Similarity:289/645 - (44%) Gaps:104/645 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 GKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPTRDDVVSCVSKGKSQIFD 128
            |.|..:..:::|.||.|::|.:|.::.:.|......  .|:|: ..|.......||.||:..:.:
Human    72 GSLNLQAMYLDEYRDRLFLGGLDALYSLRLDQAWPD--PREVL-WPPQPGQREECVRKGRDPLTE 133

  Fly   129 CKNHVRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVI-----GVGLGIAKCPYDPL 188
            |.|.|||:|..:: ..|..|||.|..|...:|  .:.|  |.|:|:     .|..|..:||::|.
Human   134 CANFVRVLQPHNR-THLLACGTGAFQPTCALI--TVGH--RGEHVLHLEPGSVESGRGRCPHEPS 193

  Fly   189 DNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTD-----LYNTSAKRLEYKFKRTLKYDSK 248
            ....:.:::.       .||:|..|:|...:.:|||:.     |.:.|              |..
Human   194 RPFASTFIDG-------ELYTGLTADFLGREAMIFRSGGPRPALRSDS--------------DQS 237

  Fly   249 WLDKPNFVGSFDIGE-------YVYFFFRETAVEYINCGK--AVYSRIARVCKKDVGGKNLLAHN 304
            .|..|.||.:..|.|       .|||||.|| |...:.|.  ...||:.|||..|.||:.:|.:.
Human   238 LLHDPRFVMAARIPENSDQDNDKVYFFFSET-VPSPDGGSNHVTVSRVGRVCVNDAGGQRVLVNK 301

  Fly   305 WATYLKARLNCSISGE--FPFYFNEIQSVYQL--PSDKS-RFFATFTTSTNGLIGSAVCSFHINE 364
            |:|:|||||.||:.|.  ...:|::::.|:.|  .:.|| ..:|.|:|.:....|.|||.:|:.:
Human   302 WSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMAD 366

  Fly   365 IQAAFNGKFKEQSSSNSAWLPVLNSRVPEPRPGTC-----------VNDTSNLPDTVLNFIRSHP 418
            |...|||.|..:......|.| ...:||.||||.|           ...|.:.||.||.|.|:||
Human   367 IWEVFNGPFAHRDGPQHQWGP-YGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFARAHP 430

  Fly   419 LMDKAVNHEHNNPVYYKRDLV--FTKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRNG-- 479
            ||...|...|..||..|..|.  ..::|||  |::..:..|.|.::||:.|.:.|::.....|  
Human   431 LMFWPVRPRHGRPVLVKTHLAQQLHQIVVD--RVEAEDGTYDVIFLGTDSGSVLKVIALQAGGSA 493

  Fly   480 ---ESLSKLLDIFEVAPNEAIQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRC--VRDP 539
               |.:.:.|.:|:|.  ..|..||||..|:.||:|:...:.|:.|..|......|..|  .|||
Human   494 EPEEVVLEELQVFKVP--TPITEMEISVKRQMLYVGSRLGVAQLRLHQCETYGTACAECCLARDP 556

  Fly   540 YCGWDKEANTCRPYELDL------LQDVANETSDI-CDSSVLKKKIV------VTYG---QSVHL 588
            ||.||  ..:|..|...|      .||:.:....: |.....:::.|      :.||   .|..|
Human   557 YCAWD--GASCTHYRPSLGKRRFRRQDIRHGNPALQCLGQSQEEEAVGLVAATMVYGTEHNSTFL 619

  Fly   589 GCFVKIPEVLKNEQVTW-YHHSKDKGRYEIRYSPTKYIETTERGLVVVSVNEADGGRYDC 647
            .|..|.|:.    .|.| .....|:|..:::  ..:.:..|||||:...::..|.|.|.|
Human   620 ECLPKSPQA----AVRWLLQRPGDEGPDQVK--TDERVLHTERGLLFRRLSRFDAGTYTC 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 151/498 (30%)
Ig_Semaphorin_C 573..664 CDD:143180 21/85 (25%)
SEMA3GXP_024309410.1 Sema_3G 67..540 CDD:200516 153/502 (30%)
PSI 539..585 CDD:214655 15/47 (32%)
Ig_Semaphorin_classIII 604..694 CDD:143279 20/76 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.910

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