DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema5a

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_005162676.1 Gene:sema5a / 561295 ZFINID:ZDB-GENE-030131-8969 Length:1078 Species:Danio rerio


Alignment Length:793 Identity:238/793 - (30%)
Similarity:349/793 - (44%) Gaps:197/793 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 ERPCCTGNDQGNNNYGKHGADH-----------VREFNC-GKLYYRTFHMNEDRDTLYVGAMDRV 88
            |.||             |.|:|           :..|.. |.:.|.....:..::.|.|||.:.:
Zfish    35 ESPC-------------HRAEHPLISHTDIEPWIHRFRAEGTVDYSQLTFDPGQNELIVGARNHL 86

  Fly    89 FRVNLQNIS-----SSNCNRDVINLEPTRDDVVSCVSKGKSQIFDCKNHVRVIQSMDQGDRLYVC 148
            ||::|:::|     ..:|:      |.|:.   :|.|:|||: .:|:|::||:  :..||||:.|
Zfish    87 FRLHLEDLSLIQEAEWHCD------EFTKG---ACFSRGKSE-EECQNYIRVL--LVNGDRLFTC 139

  Fly   149 GTNAHNPKDYVIYAN--LTHLPRSEYVIGVGLGIAKCPYDPLDNSTAIYVENGNPGGLPGLYSGT 211
            ||||..|    |..|  ||:|......|.   |:|:|||:||.||||:...:|.      ||:.|
Zfish   140 GTNAFTP----ICTNRTLTNLTEVHDQIS---GMARCPYNPLHNSTALITSSGE------LYAAT 191

  Fly   212 NAEFTKADTVIFRT-----DLYNTSAKRLEYKFKRTLKYDSKWLDKPNFVGSFDIGEYVYFFFRE 271
            ..:|:..|..|:|:     .|             ||.:|:||||::||||.|:|||.:.||||||
Zfish   192 AMDFSGRDPAIYRSLGGLPPL-------------RTAQYNSKWLNEPNFVSSYDIGNFTYFFFRE 243

  Fly   272 TAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARLNCSISGEFPFYFNEIQSVYQLPS 336
            .|||: :||:.|:||.|||||.|:||:.||...|.|::|||||||..||.||.:||:|..:.|| 
Zfish   244 NAVEH-DCGRTVFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEIPFNYNELQGTFFLP- 306

  Fly   337 DKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSNSAWLPVLNSRVPEPRP----- 396
            :....:..|||:.|.:..||||:|:::.|...|:|.||.|.:|.|||||     .|.|.|     
Zfish   307 ELELLYGIFTTNVNSIAASAVCAFNLSAITQVFSGPFKYQENSRSAWLP-----YPNPNPDFQCG 366

  Fly   397 ----GTCVNDTS-NLPDTVLNFIRSHPLMDKAVNHEHNNPV-YYKRDLV-FTKLVVDKIR-IDIL 453
                |:.||.|. ||.| ...||..|.::...|      || |:..|.| |:.:.||.:: .|:|
Zfish   367 TIDFGSYVNLTERNLQD-AQKFILMHEVVQPVV------PVPYFMEDNVRFSHVAVDVVQGKDML 424

  Fly   454 NQEYIVYYVGTNLGRIYKIVQ--YYRNGESLSKLLDIFEVAPNEAIQVMEISQTRKSLYIGTDHR 516
               |.:.|:.|:.|.|.|::.  ....|..|...:::|.:...:.|:.:.|..:...|::|...:
Zfish   425 ---YHIIYLATDYGTIKKVLSPLNQTTGSCLLDEIELFPLKKRQPIRSLLILHSHSELFVGVREQ 486

  Fly   517 IKQIDLAMCN--RRYDNCFRCVRDPYCGWDKEANTCRPYELDLLQD----------VANETSD-- 567
            :.:|.|..||  :..:.|.. .||||||||.....|...|..:...          |.|.|.|  
Zfish   487 VIKIPLMRCNFHKSREACVG-ARDPYCGWDLVLKKCTTLEESVSMSQWEQSITRCPVRNVTVDGH 550

  Fly   568 --------------------------ICDSSVLKKKIVVTYGQSVHLGCFVKIPEVLKNEQVT-- 604
                                      .|||...:     ..||... |..|::....:|...|  
Zfish   551 YGAWSGWKTCSHSDGGSVGSCQCRTRACDSPSPQ-----CGGQPCQ-GISVEVANCSRNGAWTPW 609

  Fly   605 --WYHHSKDKG-RYEIRYSPTKYIETTERGLVVVSVNEADGGRYDC--HL--------------- 649
              |...|...| .:::|............|.|.|..|..:  || |  ||               
Zfish   610 TAWAPCSTSCGIGFQVRQRSCSNPTPRHGGRVCVGQNREE--RY-CNEHLPCPPHVYWSAWSPWE 671

  Fly   650 ------GGSLLCSYNITVDAHRCTPPNKSNDYQKIYSDWCHEFEKYKTAMKSWEKKQAQCSTRQN 708
                  ||.:........:.:.|  |..|.::|...:..|.:.:| .|....|        |..|
Zfish   672 RCTVPCGGGIQSRRRTCENGNEC--PGCSTEFQSCNTLPCPDLKK-TTPWTPW--------TPVN 725

  Fly   709 FSSN-QHPNEIFR 720
            .|.| .|..:.||
Zfish   726 ISDNGGHYEQRFR 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 173/483 (36%)
Ig_Semaphorin_C 573..664 CDD:143180 21/118 (18%)
sema5aXP_005162676.1 Sema 58..492 CDD:301699 175/488 (36%)
PSI 494..541 CDD:279745 13/47 (28%)
TSP1 552..603 CDD:214559 7/56 (13%)
TSP1 606..659 CDD:214559 14/55 (25%)
TSP1 664..710 CDD:214559 6/47 (13%)
TSP1 792..844 CDD:214559
TSP1 849..901 CDD:214559
TSP_1 905..945 CDD:278517
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9633
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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