DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema6e

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001186294.1 Gene:sema6e / 556743 ZFINID:ZDB-GENE-040724-119 Length:1064 Species:Danio rerio


Alignment Length:592 Identity:203/592 - (34%)
Similarity:303/592 - (51%) Gaps:94/592 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LLQLSPLLALLLL--------LCSSVSETAADYE------NTWNFYYERPCCTGNDQGNNNYGKH 53
            :|...|||||.|:        ||...:....|.|      :...:.|  |...|| ..:|:..:.
Zfish     5 ILGSRPLLALTLMLTLTCLKHLCHGATPFPQDLEPIRTVGSEHTYLY--PSFQGN-MSDNDTARL 66

  Fly    54 GADHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPT--RDDVV 116
            |.|..|       ..|..||      :|:.|.|.||.:||    |::..|.|...:.|  ..||.
Zfish    67 GLDFQR-------MLRINHM------VYIAARDHVFAINL----SASLERIVPQQKLTWKTKDVE 114

  Fly   117 SCVSKGKSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNP--KDYVIYANLTHLPR-SEYVIGVGL 178
            .|..:||:. .:|.|:::|:...:. :.|:.|||||.||  ::|    .::.|.: .|.|||.  
Zfish   115 KCTVRGKNS-DECYNYIKVLVPRND-ETLFACGTNAFNPTCRNY----KMSSLEQDGEEVIGQ-- 171

  Fly   179 GIAKCPYDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTL 243
              |:||::...::..::.     ||  ..||.|..:|..:|.||:|:  ...|:..|     ||:
Zfish   172 --ARCPFESRQSNVGLFA-----GG--DFYSATMTDFLASDAVIYRS--LGESSPVL-----RTV 220

  Fly   244 KYDSKWLDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGK-NLLAHNWAT 307
            |||||||.:|:|:.:.:.|.|||||..|.||||...||.|:||:|||||.|.||. .:|...|.:
Zfish   221 KYDSKWLREPHFLHAIEYGNYVYFFLSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTS 285

  Fly   308 YLKARLNCSISGEFPFYFNEIQS---VYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAF 369
            :||||||||:.|:..|||:.:||   |.|: :.:......|||..|.:.|||||:|::::|:..|
Zfish   286 FLKARLNCSVPGDSFFYFDVLQSLTNVMQI-NHRPAVLGVFTTQANSITGSAVCAFYMDDIEKVF 349

  Fly   370 NGKFKEQSSSNSAWLPVLNSRVPEPRPGTCVND--------TSNLPDTVLNFIRSHPLMDKAVNH 426
            |||||||.:|.|||.||.:..||:||||:|..|        ::|.||..|.||:|:||||:||..
Zfish   350 NGKFKEQRNSESAWTPVPDEAVPKPRPGSCAGDGPAAGYKSSTNFPDETLTFIKSYPLMDEAVPS 414

  Fly   427 EHNNPVYYKRDLVF--TKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSK--LLD 487
            .:|.|.:.:....|  |::.||.......|  |.|.::|:..|.:.|::.......|.|.  |.|
Zfish   415 VNNRPCFTRTTSRFKLTQIAVDTAAGPYKN--YTVVFLGSENGHVLKVLASMHPNSSYSTQVLED 477

  Fly   488 IFEVAPNEA--------IQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFR-CV--RDPYC 541
            |....||:.        |..:|:.:...:|::.....:.::.|:.|: .|..|.: |:  |||||
Zfish   478 IDVYNPNKCNVRGEDRRILGLELDKDHHALFVAFTGCVIRVPLSRCS-DYGICRKSCLSSRDPYC 541

  Fly   542 GWDKEAN 548
            .|....|
Zfish   542 IWLSAGN 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 172/485 (35%)
Ig_Semaphorin_C 573..664 CDD:143180
sema6eNP_001186294.1 Sema_6 60..521 CDD:200503 176/504 (35%)
PSI 522..>548 CDD:307546 10/26 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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