DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema6cb

DIOPT Version :10

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_073781138.1 Gene:sema6cb / 556743 ZFINID:ZDB-GENE-040724-119 Length:1105 Species:Danio rerio


Alignment Length:592 Identity:203/592 - (34%)
Similarity:303/592 - (51%) Gaps:94/592 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LLQLSPLLALLLL--------LCSSVSETAADYE------NTWNFYYERPCCTGNDQGNNNYGKH 53
            :|...|||||.|:        ||...:....|.|      :...:.|  |...|| ..:|:..:.
Zfish    46 ILGSRPLLALTLMLTLTCLKHLCHGATPFPQDLEPIRTVGSEHTYLY--PSFQGN-MSDNDTARL 107

  Fly    54 GADHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPT--RDDVV 116
            |.|..|       ..|..||      :|:.|.|.||.:||    |::..|.|...:.|  ..||.
Zfish   108 GLDFQR-------MLRINHM------VYIAARDHVFAINL----SASLERIVPQQKLTWKTKDVE 155

  Fly   117 SCVSKGKSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNP--KDYVIYANLTHLPR-SEYVIGVGL 178
            .|..:||:. .:|.|:::|:...:. :.|:.|||||.||  ::|    .::.|.: .|.|||.  
Zfish   156 KCTVRGKNS-DECYNYIKVLVPRND-ETLFACGTNAFNPTCRNY----KMSSLEQDGEEVIGQ-- 212

  Fly   179 GIAKCPYDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTL 243
              |:||::...::..::.     ||  ..||.|..:|..:|.||:|:  ...|:..|     ||:
Zfish   213 --ARCPFESRQSNVGLFA-----GG--DFYSATMTDFLASDAVIYRS--LGESSPVL-----RTV 261

  Fly   244 KYDSKWLDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGK-NLLAHNWAT 307
            |||||||.:|:|:.:.:.|.|||||..|.||||...||.|:||:|||||.|.||. .:|...|.:
Zfish   262 KYDSKWLREPHFLHAIEYGNYVYFFLSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTS 326

  Fly   308 YLKARLNCSISGEFPFYFNEIQS---VYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAF 369
            :||||||||:.|:..|||:.:||   |.|: :.:......|||..|.:.|||||:|::::|:..|
Zfish   327 FLKARLNCSVPGDSFFYFDVLQSLTNVMQI-NHRPAVLGVFTTQANSITGSAVCAFYMDDIEKVF 390

  Fly   370 NGKFKEQSSSNSAWLPVLNSRVPEPRPGTCVND--------TSNLPDTVLNFIRSHPLMDKAVNH 426
            |||||||.:|.|||.||.:..||:||||:|..|        ::|.||..|.||:|:||||:||..
Zfish   391 NGKFKEQRNSESAWTPVPDEAVPKPRPGSCAGDGPAAGYKSSTNFPDETLTFIKSYPLMDEAVPS 455

  Fly   427 EHNNPVYYKRDLVF--TKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSK--LLD 487
            .:|.|.:.:....|  |::.||.......|  |.|.::|:..|.:.|::.......|.|.  |.|
Zfish   456 VNNRPCFTRTTSRFKLTQIAVDTAAGPYKN--YTVVFLGSENGHVLKVLASMHPNSSYSTQVLED 518

  Fly   488 IFEVAPNEA--------IQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFR-CV--RDPYC 541
            |....||:.        |..:|:.:...:|::.....:.::.|:.|: .|..|.: |:  |||||
Zfish   519 IDVYNPNKCNVRGEDRRILGLELDKDHHALFVAFTGCVIRVPLSRCS-DYGICRKSCLSSRDPYC 582

  Fly   542 GWDKEAN 548
            .|....|
Zfish   583 IWLSAGN 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 172/485 (35%)
PSI 527..>550 CDD:396154 10/25 (40%)
Ig_Semaphorin_C 573..668 CDD:409368
Ig strand A 573..579 CDD:409368
Ig strand B 583..591 CDD:409368
Ig strand C 601..607 CDD:409368
Ig strand C' 609..612 CDD:409368
Ig strand D 622..626 CDD:409368
Ig strand E 630..637 CDD:409368
Ig strand F 643..652 CDD:409368
Ig strand G 655..668 CDD:409368
sema6cbXP_073781138.1 None
Blue background indicates that the domain is not in the aligned region.

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