DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema5ba

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_684379.3 Gene:sema5ba / 556471 ZFINID:ZDB-GENE-070912-187 Length:1101 Species:Danio rerio


Alignment Length:683 Identity:213/683 - (31%)
Similarity:323/683 - (47%) Gaps:147/683 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 YRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPTRDDVVSCVSKGKSQIFDCKNH 132
            |....::..|:.|.|||.:.:||:||.|||.....    ...|..|...||.||||::: :|:|:
Zfish    80 YSQLTLDLTRNELIVGARNYLFRLNLSNISLIQAT----EWGPDEDTRRSCQSKGKTEL-ECQNY 139

  Fly   133 VRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVGLGIAKCPYDPLDNSTAIYVE 197
            :||:  :.....:..|||||..|  ..|.....::.|   |:....|:|:|||||..||||:..|
Zfish   140 IRVL--LVNKTEVVTCGTNAFQP--LCITREAGNMSR---VLERVNGVARCPYDPRHNSTAVVTE 197

  Fly   198 NGNPGGLPGLYSGTNAEFTKADTVIFRT-----DLYNTSAKRLEYKFKRTLKYDSKWLDKPNFVG 257
            :|.      ||:.|..:|:..|.||:|:     .|             ||.:|:||||::|:|:.
Zfish   198 SGE------LYAATVIDFSGRDPVIYRSLGGMPPL-------------RTAQYNSKWLNEPHFIS 243

  Fly   258 SFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARLNCSISGEFP 322
            ::|:|.:.:||.||.|||: :|||.||||:|||||.|:||:.||...|.|:.|||||||.|||.|
Zfish   244 AYDVGLFTFFFLRENAVEH-DCGKTVYSRVARVCKNDIGGRFLLEDTWTTFTKARLNCSRSGEIP 307

  Fly   323 FYFNEIQSVYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSNSAWLPVL 387
            ||:||:||.:.|| ::...:..|||:.|.:..||||:::::.|..||||.|:.|.:..|.|||..
Zfish   308 FYYNELQSTFYLP-EQDLIYGIFTTNVNSIAASAVCAYNLSAITQAFNGPFRSQENPRSTWLPTP 371

  Fly   388 NSRVPEPRPGTCVNDTSN--LPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLVFTKLVVDKIRI 450
            |. :|..:.||...:..|  |.:..|...:...||:..|.....:|:.::.|:.|:|||||.:: 
Zfish   372 NP-IPNFQCGTIDEEGPNERLTERSLQDAQRLFLMNDVVQPVSVDPLVWQDDVRFSKLVVDIVQ- 434

  Fly   451 DILNQEYI--VYYVGTNLGRIYKIVQYYRNGESLS----KLLDIFEVAPNEAIQVMEISQTRKSL 509
               .|:.:  |.|:||..|.|.|.:.  ...:||.    :.:.:|.....:.|..::|....::|
Zfish   435 ---GQDSLHHVMYIGTEYGTILKALA--TTNKSLQGCYLEEMQLFPPGLQQPILSLQILHGDRTL 494

  Fly   510 YIGTDHRIKQIDLAMCNRRYDNCFRCV--RDPYCGWDKEANTCRPYELDLLQDVANETSDICDSS 572
            ::|.:.::.:|.||.|: .|.....|:  ||||||||::...|...|               |||
Zfish   495 FVGLNDKVLKIPLARCS-SYKTELMCLDARDPYCGWDRKQRRCTTIE---------------DSS 543

  Fly   573 VLKKKIVVTYGQSVHLGCFVKIPEVLKNEQ--------VTWYHHSKDKGRYEIRYSPTKYIETTE 629
            .:.:     :.|:: ..|      .|:|:.        ..|...|.|.|            |.|.
Zfish   544 NMSQ-----WFQNI-TAC------PLRNQTTDGAYGPWAPWQPCSHDDG------------EGTS 584

  Fly   630 ----RGLVVVSVNEADGGRYDCHLGGSLLCSYNITVDAHRCTPPNKSNDYQKIYSDWCHEFEKYK 690
                |..|..|.....||: :|.         ..|::...|:.          ...|        
Zfish   585 TCLCRSRVCNSPPPRCGGK-NCQ---------GPTIEVSNCSR----------NGGW-------- 621

  Fly   691 TAMKSWEKKQAQCST--------RQNFSSNQHP 715
            |...||    .||||        ||...:|..|
Zfish   622 TPWSSW----GQCSTSCEIGFEVRQRSCNNPSP 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 165/467 (35%)
Ig_Semaphorin_C 573..664 CDD:143180 17/102 (17%)
sema5baXP_684379.3 Sema 72..508 CDD:301699 165/467 (35%)
PSI 509..556 CDD:279745 18/74 (24%)
TSP1 567..618 CDD:214559 14/82 (17%)
TSP1 621..674 CDD:214559 12/42 (29%)
TSP1 679..725 CDD:214559
TSP1 808..860 CDD:214559
TSP1 871..917 CDD:214559
TSP1 920..960 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9633
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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