DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema3c

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_017210807.2 Gene:sema3c / 553130 ZFINID:ZDB-GENE-050513-5 Length:757 Species:Danio rerio


Alignment Length:645 Identity:180/645 - (27%)
Similarity:285/645 - (44%) Gaps:120/645 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 YRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPTRDDVVSCVSKGKSQIFDCKNH 132
            ||....:||:|.:|||..|.:..:::.|||.:...   |....:...|..|...||.....|.|.
Zfish    64 YRILFTDEDQDRMYVGCKDHILSMDINNISQATLK---IFWPASISKVEECQMAGKDPTHGCGNF 125

  Fly   133 VRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVG----LGIAKCPYDPLDNSTA 193
            :||||..:: ..|::||:.|::|  ...|.|....| .|.|..:.    .|..:|.::|..|:.:
Zfish   126 LRVIQPYNR-THLFICGSGAYSP--VCAYVNRGRRP-EEQVFQISSRAESGKGRCSFNPQVNTVS 186

  Fly   194 IYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNFV-- 256
            :.:..       .|:||...:|...|..|||:.......        ||.:::||||.:|.|:  
Zfish   187 VMLNQ-------ELFSGMYIDFMGTDAAIFRSLTTRNPV--------RTDQHNSKWLSEPLFIDA 236

  Fly   257 -----GSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARLNCS 316
                 ||......:|||.||...:.....|.:::.:||||..|.||:..|.:.|.|:||||:.||
Zfish   237 QLIPDGSDPNDAKLYFFLRERLTDTSGNTKNIHAMVARVCPNDTGGQRSLVNKWTTFLKARMVCS 301

  Fly   317 ISGE--FPFYFNEIQSVYQLPSDKSR---FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQ 376
            :..|  ...:|:|:::|:.|.:|..:   .|..||::::...|||||.:::.:|...|||.|..:
Zfish   302 VLEEDGTETHFDELENVFLLETDHPKGLLIFGVFTSTSSVFRGSAVCVYNMADILTVFNGPFAHR 366

  Fly   377 SSSNSAWLPVLNSRVPEPRPGTC--------VNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVY 433
            ...|..|: ....|:|.||||||        :..|...||.|:.|:|:||:|        .||:|
Zfish   367 EGPNFQWV-AFQGRIPYPRPGTCPGGAFTPHIQSTKEFPDDVVTFVRNHPVM--------FNPIY 422

  Fly   434 ----------YKRDLVFTKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSK--LL 486
                      ...|..:|.:.||  ::...:..|.|.::||:.|.:.|:|....|| ||.:  :|
Zfish   423 PVGRKPLVVRTHADYKYTSIAVD--QVPAADGHYQVLFLGTDKGTVQKVVVLPSNG-SLDEDLIL 484

  Fly   487 DIFEVAPNEA-IQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRC--VRDPYCGWD---- 544
            :..||...:: |..:.||..::.||:.::|.|.|:.|..||.....|..|  .|||||.||    
Zfish   485 EELEVFKTQSPITNLRISSKKQQLYVSSEHGISQVSLHRCNAYGSACADCCLARDPYCAWDGLSC 549

  Fly   545 -------------------KEANTCRPYELDLLQDVANETSDICDSSVLKKKIVVTYG---QSVH 587
                               .....||.:.|...::....|.               ||   .:..
Zfish   550 SRFYPTGKRRSRRQDIMHGNPLTQCRGFNLKAYRNAVEMTQ---------------YGVKNNTTF 599

  Fly   588 LGCFVKIPEVLKNEQVTWYHHSKDKGRYEIRYSPTKYIETTERGLVVVSVNEADGGRYDC 647
            |.|..|.|:.    .|.|.....:..|.|::.|..  :.:|..||::.||:.:|.|.|.|
Zfish   600 LECQPKSPQA----SVKWLIQRDNDRRKEVKLSDR--VVSTNHGLLIRSVHSSDQGLYYC 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 144/491 (29%)
Ig_Semaphorin_C 573..664 CDD:143180 20/78 (26%)
sema3cXP_017210807.2 Sema_3C 55..524 CDD:200512 145/493 (29%)
PSI 523..568 CDD:214655 11/44 (25%)
Ig_Semaphorin_classIII 585..674 CDD:143279 21/90 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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