DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema6d

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_998164.3 Gene:sema6d / 406272 ZFINID:ZDB-GENE-040426-1933 Length:898 Species:Danio rerio


Alignment Length:792 Identity:233/792 - (29%)
Similarity:361/792 - (45%) Gaps:145/792 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SLLQLSPLLALLLLLCSSVSETAADYENTWNFYYERPCCTGND--------QG---NNNYGKHGA 55
            |::....|||.||.|.:|.:....|.:..        ...|.|        ||   :|...:.|.
Zfish    16 SVIMAMVLLAWLLPLITSATPFPRDLQPI--------SVVGLDDSYLYPSFQGLVSSNETERLGL 72

  Fly    56 DHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPTRDDVVSCVS 120
            |:.|       ..|..||      ||:.|.|.||.|||.........:.::....|  ||..|..
Zfish    73 DYQR-------MMRIQHM------LYIAARDHVFVVNLTTAVDEIIPQQILTWRST--DVSKCTV 122

  Fly   121 KGKSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNP--KDYVIYANLTHLPRSEYVIGVGLGIAKC 183
            :|::. .:|.|:::|:...:. :.|:.|||||.||  ::|       .|...|.|....||.|:|
Zfish   123 RGRNS-DECYNYIKVLVPRND-ETLFACGTNALNPACRNY-------RLSSLEQVGQELLGQARC 178

  Fly   184 PYDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSK 248
            |::...::..::.     ||  ..||.|..:|..:|.||:|: |.......|     ||:|||||
Zfish   179 PFESRQSNVGVFA-----GG--HFYSATVTDFQASDAVIYRS-LGGEGRPVL-----RTVKYDSK 230

  Fly   249 WLDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGK-NLLAHNWATYLKAR 312
            ||.:|:|:.:.:.|.||||||.|.|||:...||.||||:|||||.|.||. .:|..:|.::||||
Zfish   231 WLREPHFLHAVEYGNYVYFFFSEIAVEHTAAGKVVYSRVARVCKNDNGGSTRVLDRHWTSFLKAR 295

  Fly   313 LNCSISGEFPFYFNEIQS---VYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFK 374
            ||||:.|:..|||:.:||   |.|: :.:......|||.||.:.|||||.|::::|:..|||:||
Zfish   296 LNCSVPGDTFFYFDVLQSLTNVLQI-NQRPAVVGVFTTQTNSIPGSAVCGFYLDDIERVFNGRFK 359

  Fly   375 EQSSSNSAWLPVLNSRVPEPRPGTCVNDTS--------NLPDTVLNFIRSHPLMDKAVNHEHNNP 431
            ||.:|:|.|..|...:||:||||:|..:.|        ..||:||:||::||||:::|...::.|
Zfish   360 EQKNSDSMWTAVPEEQVPKPRPGSCAGEGSASSYSSSVQFPDSVLSFIKTHPLMEESVPSVNSQP 424

  Fly   432 VY------YKRDLVFTKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIV-QYYRNGESLSKLLDIF 489
            :.      ||    .|::|||.......|:  .|.::|:..||:.||: ..:.|....|:||:..
Zfish   425 LITNTASSYK----LTQIVVDTAAGPHKNR--TVVFLGSEDGRVLKILTNTHTNSSHTSQLLEDI 483

  Fly   490 EV------APNEAIQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRCV--RDPYCGW--- 543
            :|      ....|:..:|:.:...:|::.....:.::.|:.|.:......||:  .||||.|   
Zfish   484 DVFNPTRCVGERAVLGLELDKEHHALFVAFSSCVIRVPLSRCAQHATCRRRCLYTHDPYCIWLRT 548

  Fly   544 DKEANTCRPYELDLLQDVANE-------TSDICDSSVLKKKIVVTYGQSVHLGCFVKIPEVLKNE 601
            .:.|:....::....||:..|       .:|:..|:....|..|.....|.     ::|:.  :.
Zfish   549 GRCADMAPGFKAGFEQDIDGEQTHLFDTCTDVMSSAGSDVKSAVDSASGVK-----QLPDA--DS 606

  Fly   602 QVTWYHHSKDKGRYEIRYSPTKYIETTERGLVV--------VSVNEADGGRYDCH---LGGSLLC 655
            ....||.:.......:.:    .:.....||:|        .|..|.:......|   |..|.|.
Zfish   607 LSDGYHFTLLGACVLLAF----VLGAIASGLLVSCYCRQSSPSTPEPEATLAHTHAHTLSLSSLA 667

  Fly   656 SYNITVDAHRCTPPNKSNDYQK--IYS------------DWCHE--FEKYKTAMKSWEKKQAQCS 704
            ..|:.:|    ..|.|.::...  |||            |...|  .:..|.....||:.....|
Zfish   668 KINLLMD----NKPEKKSESPSAHIYSPAKPPEELPPTPDSTPELPIKNIKAISSQWERSHTHNS 728

  Fly   705 TRQNFSSNQ-HP 715
            |.|...:|| ||
Zfish   729 TLQLIPTNQSHP 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 167/483 (35%)
Ig_Semaphorin_C 573..664 CDD:143180 17/101 (17%)
sema6dNP_998164.3 Sema 64..523 CDD:301699 171/502 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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