DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and Sema4a

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001012078.2 Gene:Sema4a / 310630 RGDID:1304636 Length:762 Species:Rattus norvegicus


Alignment Length:619 Identity:184/619 - (29%)
Similarity:293/619 - (47%) Gaps:85/619 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 VREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPTRDDVVSCVSKG 122
            :|:|:       |..::.|.:||||||.:.:..:|::|...... |::|....:......|..|.
  Rat    63 LRDFD-------TLLLSGDGNTLYVGAREAILALNIENPGIPRL-RNMIPWPASEKKKNECAFKK 119

  Fly   123 KSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNPK-DYVIYANLTHLPRSEYVIGVGLGIAKCPYD 186
            ||....|.|.:||:.|.: ...||.|||.|.:|. .::...:...||..:..:..|.|  :.|:|
  Rat   120 KSNETQCFNFIRVLVSYN-ATHLYACGTFAFSPACTFIELQDSFLLPILKDKVTDGKG--QSPFD 181

  Fly   187 PLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYD--SKW 249
            |....||:.|:     |:  |||||...|..::.::.||           ...:..||.|  .:|
  Rat   182 PAHKHTAVLVD-----GM--LYSGTMNNFLGSEPILMRT-----------LGSQPVLKTDIFLRW 228

  Fly   250 L-DKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARL 313
            | ...:||.:....:.|||||.|||.|:....:...||:|:|||.||||:.||...|.|:|||:|
  Rat   229 LHPDASFVAAIPSTQVVYFFFEETASEFDFFEELYTSRVAQVCKNDVGGEKLLQKKWTTFLKAQL 293

  Fly   314 NCSISGEFPFYFNEIQSVYQLPSDK---SRFFATFTT--STNGLIGSAVCSFHINEIQAAFNGKF 373
            .|:..|:.|  ||.|:....||:|.   .|.:|.||:  ...|...||||:|.:.:|:..|.||:
  Rat   294 LCAQPGQLP--FNIIRHAVLLPADSPSVPRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKY 356

  Fly   374 KEQSSSNSAWLPVLNSRVPEPRPGTCVNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDL 438
            ||.:...|.|.....|.| .||||:|....|:  |..|.|::.|.|||:   |....|:..|..:
  Rat   357 KELNKETSRWTTYRGSEV-NPRPGSCSMGPSS--DKALTFMKDHFLMDE---HVVGAPLLVKSGV 415

  Fly   439 VFTKLVVDKIR-IDILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSKLLDIFEVAPN-EAIQVME 501
            .:|:|.|:..: :|  ...::|.|:||:.|.::|.|.   ...|.:.|::..:::|| |.:|.::
  Rat   416 EYTQLAVETAQGLD--GSSHVVLYLGTSTGSLHKAVV---PQNSSAYLVEEIQLSPNSEPVQNLQ 475

  Fly   502 ISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRCV--RDPYCGWDKEANTCRPYE---LDLLQDV 561
            ::.|:.:::.|....|.::..|.|: .|.:|..||  |||:|.||.|:..|....   |...||:
  Rat   476 LAPTQGAVFAGFSEGIWRVPRANCS-VYKSCVDCVLARDPHCAWDPESRLCSLLSGSPLTWKQDM 539

  Fly   562 ANETSD-IC------------DSSVLKKKIVVTYGQSVHLGCFVKIPEVLKNEQVTWYHHSKDKG 613
            .....: .|            .|..|.|:::......:.|.|    |::   ..:..||.|..|.
  Rat   540 ERGNPEWACARGPMARSPRRQSSPQLIKEVLTVPNSILELPC----PQL---SALASYHWSHGKA 597

  Fly   614 RYEIRYSPTKYIETTERGLVVVSVNEADGGRYDC 647
            :.. ..|.|.|     .|.:::...:..||.|.|
  Rat   598 KIP-EASSTVY-----NGSLLLLPQDGVGGLYQC 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 146/467 (31%)
Ig_Semaphorin_C 573..664 CDD:143180 17/75 (23%)
Sema4aNP_001012078.2 Sema 57..497 CDD:301699 148/475 (31%)
PSI 498..542 CDD:214655 16/44 (36%)
Ig 567..639 CDD:299845 16/72 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.870

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