DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema3d

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_571123.2 Gene:sema3d / 30250 ZFINID:ZDB-GENE-990715-2 Length:764 Species:Danio rerio


Alignment Length:742 Identity:196/742 - (26%)
Similarity:338/742 - (45%) Gaps:142/742 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 TGNDQGNNNYGKHGADHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDV 105
            ||:.:|.                   :::|..::|:|..|.:||.|.|:.::..||   |.:...
Zfish    66 TGSSEGQ-------------------HFQTVLLDEERSRLLLGAKDHVYLLDPDNI---NKHPKK 108

  Fly   106 INLEPTRDDVVSCVSKGKSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNP-------------KD 157
            ::...:||.|..|:..||:.:.:|.|.:||:.|.:: ..:|.|||.|.:|             :.
Zfish   109 LSWPASRDRVEMCILAGKNPLTECANFIRVLHSYNR-THVYACGTGAFHPTCAFLEIKGHKEDRW 172

  Fly   158 YVIYANLTHLPRSEYVIGVGLGIAKCPYDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVI 222
            ..:::|.           :..|..|||:||.....::..:.       .||:||.::|...|:..
Zfish   173 LQLHSNT-----------MESGRMKCPFDPNQPFASVLTDQ-------YLYAGTASDFLGKDSTF 219

  Fly   223 FRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNFVGSFDIG-------EYVYFFFRETAVEYINCG 280
            .|     :.......::.||...:..|:::..|:.:..|.       :.:||||||.:.:.....
Zfish   220 TR-----SLGPPPHQQYIRTDISEDYWINEGKFISAHPISDTYNPDDDKIYFFFREASRDGSTTD 279

  Fly   281 KAVYSRIARVCKKDVGGKNLLAHNWATYLKARLNCSISGE--FPFYFNEIQSVYQLPSDKSR--- 340
            |:|.||:||:|:.||||...|.:.|.|:|||||.|||.|.  ...:|:|:|.::.|||...:   
Zfish   280 KSVLSRVARICRNDVGGLRSLTNKWTTFLKARLVCSIPGPDGVDTHFDELQDIFLLPSRDEKNPM 344

  Fly   341 FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSNSAWLPVLNSRVPEPRPGTC------ 399
            .:..|||:::...|||||.:.:.:|:|||||.:..:...:..|:. ...|:|.||||||      
Zfish   345 VYGVFTTTSSIFKGSAVCVYTMEDIRAAFNGPYAHKEGPDHRWVE-YEGRIPYPRPGTCPSRTYD 408

  Fly   400 --VNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLVF--TKLVVDKIRIDILNQEYIVY 460
              :..|.:.||.|::|||.||||.::|:.....|::.:.:..:  |:::||::..:  :.:|.|.
Zfish   409 PHIKTTKDFPDEVISFIRLHPLMYQSVHPMTGRPIFTRINTEYRLTQIIVDRVAAE--DGQYAVM 471

  Fly   461 YVGTNLGRIYKIVQY-YRNGESLSKLLDIFEVAPNEA-IQVMEISQTRKSLYIGTDHRIKQIDLA 523
            ::||::|.:.|:|.. ..|..|...:|:..:|..|.: |..||:|..::.|::|....:.|:.|.
Zfish   472 FLGTDMGSVLKVVSITQENWSSEEIILEELQVFKNPSPILNMEVSSKQQQLFVGGSDGLVQVSLH 536

  Fly   524 MCNRRYDNCFRC--VRDPYCGWDKEANTCRPY-----ELDLLQDVAN--------ETSDICDSSV 573
            .|:.....|..|  .|||||.||  ...|..|     .....||:.:        :|.|:...:|
Zfish   537 RCHIYGQGCAECCLARDPYCAWD--GTQCSRYIPASKRRARRQDIKHGDPSSHCWDTEDVLGRNV 599

  Fly   574 LKKKIVVTYGQSVHLGCFVKIPEVLKNEQVTWY------HHSKDKGRYEIRYSPTKYIETTERGL 632
            .:|.:......|..|.|..|..:.|    :.|:      .|     |.||:  |.:.:..|:|||
Zfish   600 EEKVLYGVESNSSFLECVSKSQQAL----IRWFVLKPGVDH-----RQEIK--PDERVLITDRGL 653

  Fly   633 VVVSVNEADGGRYDC----HLGGSLLCSYNI------TVDAHR------------CTPPNKSNDY 675
            ::..:...|.|.|.|    |.....|...::      .::||:            ..|..:..||
Zfish   654 LIRWLQRGDAGSYFCTSQEHRFTRTLLHVSLHILDRGQINAHQPAIRESSENPAVTEPRQRYKDY 718

  Fly   676 QKIYSDWCHEFEKYKTAMKSWEKKQAQ 702
            .::.|......::|...|...||||.|
Zfish   719 LRMLSGPARSLDEYCETMWHREKKQKQ 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 140/493 (28%)
Ig_Semaphorin_C 573..664 CDD:143180 23/106 (22%)
sema3dNP_571123.2 Sema_3D 65..538 CDD:200513 144/520 (28%)
PSI 537..589 CDD:214655 14/53 (26%)
Ig_Semaphorin_classIII 599..689 CDD:143279 23/100 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 743..764 2/3 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9670
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153798at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

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