DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and Sema6a

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_006525789.1 Gene:Sema6a / 20358 MGIID:1203727 Length:1048 Species:Mus musculus


Alignment Length:600 Identity:202/600 - (33%)
Similarity:306/600 - (51%) Gaps:84/600 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LLALLLLLCSSVSETAADYE----NTWNFYYERPCCTGNDQGNNNYGKHGADHVREFNCGKLYYR 69
            ||.|.||.|:... ...|.|    :..|:..:.|...|:..|.|...:|..|          ...
Mouse     7 LLCLTLLHCAGAG-FPEDSEPISISHGNYTKQYPVFVGHKPGRNTTQRHRLD----------IQM 60

  Fly    70 TFHMNEDRDTLYVGAMDRVFRVNLQNISSSN--CNRDVINLEPTRDDVVSCVSKGKSQIFDCKNH 132
            ...||.   ||||.|.|.::.|::....:..  |::. :..:..:.||.:|..|||.: .:|.|.
Mouse    61 IMIMNR---TLYVAARDHIYTVDIDTSHTEEIYCSKK-LTWKSRQADVDTCRMKGKHK-DECHNF 120

  Fly   133 VRVIQSMDQGDRLYVCGTNAHNP--KDYVIYANLTHLPRSEYVIGVGLGIAKCPYDPLDNSTAIY 195
            ::|:...:. |.|:||||||.||  ::|.:....|.  ..|:     .|:|:||||....:.|::
Mouse   121 IKVLLKKND-DTLFVCGTNAFNPSCRNYRVDTLETF--GDEF-----SGMARCPYDAKHANIALF 177

  Fly   196 VENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNFVGSFD 260
            .:.       .|||.|..:|...|.||:|: |.::..       .||:|:|||||.:|.||.:.|
Mouse   178 ADG-------KLYSATVTDFLAIDAVIYRS-LGDSPT-------LRTVKHDSKWLKEPYFVQAVD 227

  Fly   261 IGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGG-KNLLAHNWATYLKARLNCSISGEFPFY 324
            .|:|:||||||.||||...||.|:.|:|:|||.|:|| :.:|...|.::||||||||:.|:..||
Mouse   228 YGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFY 292

  Fly   325 FNEIQSVYQLPSDKSR--FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSNSAWLPVL 387
            ||.:|:|..:.....|  ..|||:|..|.:.|||||::.:.:|...|.|:||||.|.:|.|.||.
Mouse   293 FNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPDSTWTPVP 357

  Fly   388 NSRVPEPRPGTCVND-------TSN-LPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLV---FT 441
            :.|||:||||.|...       ||| .||..||||::|||||:||....|.| ::.|.:|   .|
Mouse   358 DERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINRP-WFLRTMVRYRLT 421

  Fly   442 KLVVDKIRIDILNQEYIVYYVGTNLGRIYKIV-----QYYRNGESLSKLLDI-------FEVAPN 494
            |:.||......  |.:.|.::|:..|.|.|.:     ..:.||....:.:::       ::...:
Mouse   422 KIAVDNAAGPY--QNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVED 484

  Fly   495 EAIQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFR-CV--RDPYCGWDKEANTCRPY--- 553
            :.|..|::.:...|||:.....:.::.|..| .|:..|.: |:  |||||||.:|:.:|...   
Mouse   485 KRIMGMQLDRASGSLYVAFSTCVIKVPLGRC-ERHGKCKKTCIASRDPYCGWVRESGSCAHLSPL 548

  Fly   554 -ELDLLQDVANETSD 567
             .|...||:....:|
Mouse   549 SRLTFEQDIERGNTD 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 169/486 (35%)
Ig_Semaphorin_C 573..664 CDD:143180
Sema6aXP_006525789.1 Sema_6A 48..513 CDD:200527 172/505 (34%)
PSI 514..>546 CDD:366642 13/32 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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