DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and Sema5b

DIOPT Version :9

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_006521932.1 Gene:Sema5b / 20357 MGIID:107555 Length:1122 Species:Mus musculus


Alignment Length:744 Identity:237/744 - (31%)
Similarity:351/744 - (47%) Gaps:144/744 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LQLSPLLALLLLLCS--SVSETAADYENTWNFYYERPCCTGNDQG------------NNNYGKHG 54
            |.||.||:.|.||.|  |.|:..|...::     |:..||..:..            |..|    
Mouse     7 LALSLLLSSLTLLVSHLSSSQDIASESSS-----EQQMCTRREHPIVAFEDLKPWVFNFTY---- 62

  Fly    55 ADHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEPTRDDVVSCV 119
             ..||:|:       ...::..|:.|.|||.:.:||::|.|:|..... :..:.|.||.   ||.
Mouse    63 -PGVRDFS-------QLALDPSRNQLIVGARNYLFRLSLANVSLLQAT-EWASSEDTRR---SCQ 115

  Fly   120 SKGKSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVGLGIAKCP 184
            ||||:: .:|:|:|||:  :..|.::::|||||.:|  ......:.:|.|:...|.   |:|:||
Mouse   116 SKGKTE-EECQNYVRVL--IVSGRKVFMCGTNAFSP--VCSSRQVGNLSRTIEKIN---GVARCP 172

  Fly   185 YDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKW 249
            |||..||||:....|.      ||:.|..:|:..|..|:|:   ..|...|     ||.:|:|||
Mouse   173 YDPRHNSTAVISSQGE------LYAATVIDFSGRDPAIYRS---LGSGPPL-----RTAQYNSKW 223

  Fly   250 LDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARLN 314
            |::||||.:||||.:.|||.||.|||: :||:.||||:|||||.||||:.||...|.|::|||||
Mouse   224 LNEPNFVAAFDIGLFAYFFLRENAVEH-DCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLN 287

  Fly   315 CSISGEFPFYFNEIQSVYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSS 379
            ||..||.|||:||:||.:.|| ::...:..|||:.|.:..||||:|:::.|..||||.|:.|.:.
Mouse   288 CSRPGEVPFYYNELQSAFHLP-EQDLIYGVFTTNVNSIAASAVCAFNLSAISKAFNGPFRYQENP 351

  Fly   380 NSAWLPVLNSRVPEPRPGTC--VNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLVFTK 442
            .:||||:.|. :|..:.||.  .....||.:..|...:...||.:||......|...:..:.|:.
Mouse   352 RAAWLPIANP-IPNFQCGTLPETGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSH 415

  Fly   443 LVVDKIRI-DILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSKLLDIFEVAPN--EAIQVMEISQ 504
            ||||.::. |.|   |.|.|:||..|.|.|.:...........|.::..:.|.  |.::.:.|..
Mouse   416 LVVDLVQAKDTL---YHVLYIGTESGTILKALSTASRSLRGCYLEELHVLPPGRLEPLRSLRILH 477

  Fly   505 TRKSLYIGTDHRIKQIDLAMCNRRYDNCFRCV--RDPYCGWDKEANTCRPYELDLLQDVANETSD 567
            :.::|::|...|:.::.|..|: .|.:...|:  ||||||||.:...|     ..|:|.:|.:..
Mouse   478 SARALFVGLSDRVLRVPLERCS-AYHSQGACLGARDPYCGWDGKRQLC-----STLEDSSNMSLW 536

  Fly   568 ICDSSVLKKKIVVTYGQSVHLGCFVKIPEVLKNEQVTWYHHSKDKGRYEIRYSPTKYIETTERGL 632
            |.:.:....:.|...|     |.....|                       :.|.::::....|.
Mouse   537 IQNITTCPVRNVTRDG-----GFGPWSP-----------------------WKPCEHLDGDNSGS 573

  Fly   633 VVVSVNEADGGRYDCHLGGSLLC---SYNITVDAHRCTPPNKSNDYQKIYSDWCHEFEKYKTAMK 694
            .:......|..|..|   |.|.|   |.:|.         |.|.:     ..|        ||..
Mouse   574 CLCRARSCDSPRPRC---GGLECLGPSIHIA---------NCSRN-----GAW--------TAWS 613

  Fly   695 SWEKKQAQCST--------RQNFSSNQHP 715
            ||    |||||        ||...||..|
Mouse   614 SW----AQCSTSCGIGFQVRQRSCSNPAP 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 169/461 (37%)
Ig_Semaphorin_C 573..664 CDD:143180 14/93 (15%)
Sema5bXP_006521932.1 Sema 60..496 CDD:387663 173/479 (36%)
PSI 497..544 CDD:366642 16/52 (31%)
TSP1 609..662 CDD:214559 15/42 (36%)
TSP1 667..742 CDD:214559
TSP1 827..879 CDD:214559
TSP1 884..936 CDD:214559
TSP_1 940..981 CDD:387593
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9633
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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