DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema6c

DIOPT Version :10

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_002937315.2 Gene:sema6c / 100486277 XenbaseID:XB-GENE-989787 Length:1043 Species:Xenopus tropicalis


Alignment Length:414 Identity:89/414 - (21%)
Similarity:142/414 - (34%) Gaps:143/414 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 QLVAAIHENLRNNVQLKVDVLLDFTRGTRGERNSKTTLMPLVKETDNFRLSLYHTPVLRGLTK-- 171
            :|.||:||.             |...|....|.::.:|...:.|.::..|       ||..|.  
 Frog  1614 KLYAAMHEP-------------DGVAGVSAIRKAEPSLKEQILEHESLGL-------LRDATACY 1658

  Fly   172 ----RLAPPRWNELLGIQHMKLYLVD-DTVI--ISGANLSNDYFTNRQDRYVMIEDRRLA--DFY 227
                :|.|.:.....|:....|.|.. .|||  ::|.:.:...:|:..:.|.:....:|:  |..
 Frog  1659 DRAIQLEPDQIIHYHGVVKSMLGLGQLSTVITQVNGVHANRSEWTDELNTYRVEAAWKLSQWDLV 1723

  Fly   228 ANFLGKVQEFSLTVGRDGATRLHDTWTMLPYKCAQLEFATEARDRIRAYYRS---VMDEQ----- 284
            .|:|          ..||.:   .||::   :..||..:.:.|| |.|:|.|   |..||     
 Frog  1724 ENYL----------AADGKS---TTWSV---RLGQLLLSAKKRD-ITAFYDSLKLVRAEQIVPLS 1771

  Fly   285 -------------------RAVCERDEA-----QHAD---------TWIFPLIEMGQLGIHHDSL 316
                               ..:||.:.:     ||:.         .|:..| ||.|     :|.
 Frog  1772 AASFERGSYQRGYEYIVRLHMLCELEHSIKPLFQHSPGDSSQEDSLNWVARL-EMTQ-----NSY 1830

  Fly   317 ATKQLLSGCLAGSQLRLATGYFNLTETYMNTLTNECQAQCNILMAHPNANGFLGAKGPAGGIPAA 381
            ..|:.:   ||   ||.|....|....| |.:..||..|          :..:..|  ||....|
 Frog  1831 RAKEPI---LA---LRRALLSLNKRPDY-NEMVGECWLQ----------SARVARK--AGHHQTA 1876

  Fly   382 YSLLARKFLEMLKSSGQSHRVELLEYERPGWTYH-----------AKGLWYYLPDSSLP----NV 431
            |:.|.        ::|:|...||. .||..|.:.           .||:....|::..|    |:
 Frog  1877 YNALL--------NAGESRLAELY-VERAKWLWSKGDVHQALIVLQKGVELCFPENETPPEGKNM 1932

  Fly   432 TLIGSS-----NFGERSVNRDLEA 450
            .:.|.:     .|.|.:.|.:..|
 Frog  1933 LIHGRAMLLVGRFMEETANFESNA 1956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 89/414 (21%)
PSI 527..>550 CDD:396154
Ig_Semaphorin_C 573..668 CDD:409368
Ig strand A 573..579 CDD:409368
Ig strand B 583..591 CDD:409368
Ig strand C 601..607 CDD:409368
Ig strand C' 609..612 CDD:409368
Ig strand D 622..626 CDD:409368
Ig strand E 630..637 CDD:409368
Ig strand F 643..652 CDD:409368
Ig strand G 655..668 CDD:409368
sema6cXP_002937315.2 Sema_6E 50..511 CDD:200531
PSI 512..563 CDD:396154
Blue background indicates that the domain is not in the aligned region.

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