DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2a and sema6bb

DIOPT Version :10

Sequence 1:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_073766334.1 Gene:sema6bb / 100148883 ZFINID:ZDB-GENE-081105-129 Length:950 Species:Danio rerio


Alignment Length:636 Identity:204/636 - (32%)
Similarity:309/636 - (48%) Gaps:111/636 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LLALLLLLCSSVSE-------TAADYENTWNFYYERPCCTGNDQGNNNYGKHGADHVREFNCGKL 66
            |..||.|:|:...|       ...|....:..:..||        :::..:|...|::       
Zfish    87 LFWLLRLVCAVFPEEPGPLNFVRTDVVRKYPVFLGRP--------HHSTLRHEPLHIQ------- 136

  Fly    67 YYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNC----NRDVINLEPTRDDVVSCVSKGKSQIF 127
              |...:|.   |||:||.|.:|||.|.|:.....    .|   ..|..::|:..|..|||.: .
Zfish   137 --RILQVNR---TLYIGARDDLFRVELDNVVGEEMFYSKKR---TWESNKNDIRICRMKGKHE-D 192

  Fly   128 DCKNHVRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVGLGIAKCPYDPLDNST 192
            :|:|:::|:.|...|  |::|||||.||    :.||.|. ...|.|.....|:|:|||||...:.
Zfish   193 ECRNYMKVLLSRQGG--LFICGTNAFNP----LCANYTG-DTLEMVGETVSGMARCPYDPKHANV 250

  Fly   193 AIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNFVG 257
            |::.|.       .||:.|..:|...|.||:|:...|.:.        ||:|:||||..:|.||.
Zfish   251 ALFAER-------NLYTATVTDFLAIDAVIYRSLGDNPAL--------RTVKHDSKWFREPYFVS 300

  Fly   258 SFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGG-KNLLAHNWATYLKARLNCSISGEF 321
            :.:.|.:|||||||.|:|:....|.|.||:|||||.|.|| :.:|...|.::|||||||||.|:.
Zfish   301 AVEWGPHVYFFFREMAMEFNYLEKVVVSRVARVCKADQGGSQRVLEKQWTSFLKARLNCSIPGDS 365

  Fly   322 PFYFNEIQSVYQLPSDKSR--FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSNSAWL 384
            .||||.:.|...:.....|  ..|.|:|.:|.:.|||||:|.:.::...|:|:||||.|..|.|.
Zfish   366 HFYFNLLHSTSPIIRMHGRDIILAVFSTPSNSIPGSAVCAFDMEQLAGVFDGRFKEQKSPESIWT 430

  Fly   385 PVLNSRVPEPRPGTCV------NDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLV---F 440
            ||.:..:|:||||.|.      |.:::.||.:|.|:::|||||:||......| :..|.:|   .
Zfish   431 PVPDEALPKPRPGGCAVQGSKFNSSNSFPDDMLTFVKTHPLMDEAVPSLGQRP-WIVRTMVRYQL 494

  Fly   441 TKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSK---LLDIFE-VAPN------- 494
            .|:|||.......||  .|.::|::.|.|.|.:.......:::.   .|:.|| ..|:       
Zfish   495 NKMVVDTNAGPYGNQ--TVLFLGSSRGTILKFLVTPNRDNTVTNNNVFLEEFEGYNPDRCGTDSP 557

  Fly   495 EAIQVMEISQTR--KSLYIGTDHRIKQIDLAMCNRRYDNCFR-CV--RDPYCGWDK-------EA 547
            :|.|::.::..|  .||.:.....:.::.:|.| :.|..|.: |:  |||||||..       .|
Zfish   558 QARQLLSLTLDRISHSLLLTFPSCVIKVPVARC-QLYSACMKNCIASRDPYCGWTTGDICSFLRA 621

  Fly   548 NTCRPYELDLLQDVANETSDICDSSVLKKKIVVTYGQSVHLGCFVKIPEVL 598
            .|..|:|.|:.|...:...| ||..              ..|.|::.|:.|
Zfish   622 GTRLPFEQDVEQGNTSHLGD-CDGP--------------QQGRFIEEPDGL 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 168/485 (35%)
PSI 527..>550 CDD:396154 11/32 (34%)
Ig_Semaphorin_C 573..668 CDD:409368 4/26 (15%)
Ig strand A 573..579 CDD:409368 0/5 (0%)
Ig strand B 583..591 CDD:409368 1/7 (14%)
Ig strand C 601..607 CDD:409368
Ig strand C' 609..612 CDD:409368
Ig strand D 622..626 CDD:409368
Ig strand E 630..637 CDD:409368
Ig strand F 643..652 CDD:409368
Ig strand G 655..668 CDD:409368
sema6bbXP_073766334.1 None
Blue background indicates that the domain is not in the aligned region.

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