DRSC/TRiP Functional Genomics Resources

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Protein Alignment wcd and SPBC29A3.06

DIOPT Version :9

Sequence 1:NP_611121.1 Gene:wcd / 36831 FlyBaseID:FBgn0262560 Length:506 Species:Drosophila melanogaster
Sequence 2:NP_595834.2 Gene:SPBC29A3.06 / 2540529 PomBaseID:SPBC29A3.06 Length:519 Species:Schizosaccharomyces pombe


Alignment Length:528 Identity:140/528 - (26%)
Similarity:235/528 - (44%) Gaps:82/528 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SDESSDGLEELQSLKALYGQQEQEKPAKIKRERYIPKASQAKELNYVEVPMEKVLFGDRQRLLTN 67
            :|...|.||:|:..:.....              ...|..||:    .||:: ::.||      |
pombe    46 NDAQEDELEKLEDAELFMFD--------------TGSADGAKD----SVPLD-IIAGD------N 85

  Fly    68 LAKSVGQKLPNDDEDEQEENPGQAKPGDKRKAAWSDSDDEDLQVGDVKKATKHTGPLNHLRKDKS 132
            ..|        :||:...|.|          :.|.|||||.|.:    ....|    :.|||.:.
pombe    86 TVK--------EDEEASNEIP----------SIWEDSDDERLMI----SLQDH----SRLRKLRQ 124

  Fly   133 YKE-----------YLTARFQRTLNQPKWAEKK-VKNEDDE-DVSSDEELL---------RTVGF 175
            |::           .|..:|:|....|:||:|: |..|:|| :..|::.::         .:|.:
pombe   125 YEDEDMVNGLQYARRLRTQFERVYPVPEWAKKQDVTEEEDEFNALSEKSVIPKSLKSLFKSSVSY 189

  Fly   176 IDRKARNSDLPQKTLNFKRVKDLNRATYAEGNATSIQFHPTSTAALVAGMNGLATIYAVDGQKNE 240
            |::.::.  |...|:|.||:||.|....:......:..||.....|..|.:....||.:||:.|.
pombe   190 INQSSKL--LAPGTINIKRLKDANFQAPSHSGIRCMSIHPYFPLLLTCGFDRTLRIYQLDGKVNP 252

  Fly   241 RLHNMRFKKFPLACSRIAPCGTRAFFGSVKPFYYSYDLLEAKESKL-KLPGAMEF---MHRFEVS 301
            .:.::..:...|..:...|.|.|......:.:.|.:||..|:..|: ::.|...|   |.||.|.
pombe   253 LVTSLHLRSSALQTALFHPDGKRVIAAGRRKYMYIWDLESAQVQKVSRMYGQENFQPSMERFHVD 317

  Fly   302 PCGKFIVTAGKFGAIHLLTAKTNELLHSFKQEGKVKGFTWSSDSKRILVCGSTSNVSVLNLRQ-N 365
            |.||:|...|:.|.|:||.|.|.:...|||.||.:....::||...:||....:.|...|:.| :
pombe   318 PTGKYIALEGRSGHINLLHALTGQFATSFKIEGVLSDVLFTSDGSEMLVLSYGAEVWHFNVEQRS 382

  Fly   366 LIEHIFMDDGCIHGESIQLSPNQRLLATGSQEGVVNIYDYESIFASKAPQPEKRFMNLRTAITDL 430
            ::....:.|| :......|.|:.:.||.||:.|:|||||.::..|..||:|.....|:..:|..:
pombe   383 VVRRWQVQDG-VSTTHFCLDPSNKYLAIGSKSGIVNIYDLQTSNADAAPKPVTTLDNITFSINSM 446

  Fly   431 QFNHSSELLAMCSSEAPNAFKLAHFPSATVYSNFPAQNEKVGFVTSMAFSPHSSFLAFATKGKQV 495
            .|:..|::||:.|....:..:|.|.||.:|:.|:|.....:|.||.:||..... |....:..:|
pombe   447 SFSQDSQVLAIASRGKKDTLRLVHVPSFSVFRNWPTSATPLGRVTCLAFGKGGE-LCVGNEAGRV 510

  Fly   496 PLFRLKYF 503
            .|::|.::
pombe   511 GLWKLAHY 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wcdNP_611121.1 WD40 <131..444 CDD:225201 94/339 (28%)
WD40 repeat 209..247 CDD:293791 9/37 (24%)
WD40 296..>504 CDD:295369 67/209 (32%)
WD40 repeat 298..332 CDD:293791 15/33 (45%)
WD40 repeat 337..371 CDD:293791 7/34 (21%)
WD40 repeat 376..415 CDD:293791 14/38 (37%)
WD40 repeat 428..465 CDD:293791 11/36 (31%)
SPBC29A3.06NP_595834.2 WD40 155..>516 CDD:225201 103/364 (28%)
WD40 216..514 CDD:295369 87/299 (29%)
WD40 repeat 221..259 CDD:293791 9/37 (24%)
WD40 repeat 264..308 CDD:293791 10/43 (23%)
WD40 repeat 315..347 CDD:293791 13/31 (42%)
WD40 repeat 352..389 CDD:293791 7/36 (19%)
WD40 repeat 397..437 CDD:293791 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 125 1.000 Domainoid score I1394
eggNOG 1 0.900 - - E1_KOG2055
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 168 1.000 Inparanoid score I1205
OMA 1 1.010 - - QHG55114
OrthoFinder 1 1.000 - - FOG0004465
OrthoInspector 1 1.000 - - oto101582
orthoMCL 1 0.900 - - OOG6_102672
Panther 1 1.100 - - LDO PTHR18359
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1617
SonicParanoid 1 1.000 - - X4897
TreeFam 1 0.960 - -
1312.860

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