Sequence 1: | NP_001286489.1 | Gene: | Nup62 / 36830 | FlyBaseID: | FBgn0034118 | Length: | 394 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_013762.1 | Gene: | NUP116 / 855066 | SGDID: | S000004650 | Length: | 1113 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 407 | Identity: | 99/407 - (24%) |
---|---|---|---|
Similarity: | 149/407 - (36%) | Gaps: | 98/407 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 36 GAATTAPATKTTFSFGTPAPTAGIGG-------GDADNSKAQAPPAFGFGLG---SGTASAPLTL 90
Fly 91 GTQAA--ANPASTTSATATGTSAAPPAFGG--FTAQPAASVVPTIATSAPNTAATT--TGLLGGS 149
Fly 150 GLGAPKTTAAASTTLTAAPSAIASTQGAA-------PAPTLSTGGAFANLTTETKTTDSSAVSTA 207
Fly 208 SQ---LSYHQLEEHINKWTLEFEEQEKVFTEQ------------------ATQINAWD--KLLIS 249
Fly 250 NNGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLPRVDMERSQTYLMV- 313
Fly 314 ----ENLDTQLKQMSE--------DLKEIIDN------LNEANKGQDTTDPIIQIGKILNAHMNS 360
Fly 361 LQWIESQSTNISKKLED 377 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nup62 | NP_001286489.1 | Nsp1_C | 194..300 | CDD:309972 | 24/128 (19%) |
SMC_N | <213..392 | CDD:330553 | 37/204 (18%) | ||
NUP116 | NP_013762.1 | Med15 | 358..>604 | CDD:312941 | 26/79 (33%) |
Nucleoporin_FG2 | 568..>720 | CDD:406391 | 48/152 (32%) | ||
Nucleoporin2 | 970..1108 | CDD:397975 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R852 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.030 |