Protein Alignment Nup62 and nup98

DIOPT Version :9

• Sequence 1: NP_001286489.1
• Gene: Nup62 / 36830
• FlyBaseID: FBgn0034118
• Length: 394
• Species: Drosophila melanogaster
• Sequence 2: NP_956979.2
• Gene: nup98 / 777756
• ZFINID: ZDB-GENE-040426-1180
• Length: 1814
• Species: Danio rerio
• Alignment Length: 522
• Identity: 115/522 - (22%)
• Similarity: 169/522 - (32%)
• Gaps: 177/522 - (33%)

  Fly     6 PTT------TAAPTGG----------ATSSFSFGLSTGTPAAAPAS---------------GAAT 39
            |:|      ::||..|          .||:.:||.:||:..|.|..               |:||
Zfish   238 PSTGTGLFGSSAPNTGFNFGQNKTTFGTSTGAFGTTTGSLFAQPQQQQQQQQQNSSLFKPFGSAT 302

  Fly    40 TAPATKTTFSFGTPAP-------TAGI--------GGGDADNSKAQAPPAFGFGL------GSGT 83
            |  ....|||||..:.       |.|:        .||...|:.......||.|:      |.|.
Zfish   303 T--TQNNTFSFGNTSSMVSSSWCTKGLFANTAASQAGGLFGNTNTSTATGFGTGIFGQTNTGFGN 365

  Fly    84 ASAPLTLGTQAAANPASTTSATATGTSAAPPAFGG----FTAQPAASVVPTIATS---------- 134
            .......|.:.|....:||||         |:||.    |..:|..::.....||
Zfish   366 VGTQNLFGNKPAGFGTTTTSA---------PSFGSGPGLFANKPTLTLGTNTNTSTFGFSGTGAG 421

  Fly   135 ----APNTAATTTGLLGGSGLGAPKTTAAASTTLTAAPSAIASTQGAA---PAPTLSTGGAFANL 192
                ...||||..|.:.|:|.||...|  ..|:|......:.||.|:.   .|...:||.:..|.
Zfish   422 GGLFGNKTAATGLGPVLGAGFGAGVGT--GQTSLFGNNQKLGSTLGSVGTFGAGGFNTGASTLNF 484

  Fly   193 TTETK---TTDSSAVSTASQLSYHQL------------------------EEHIN------KWTL 224
            ....:   .||.||.:....:...|:                        ||.:.      :..|
Zfish   485 GAPQQPIALTDPSAGAAQQAVLQQQISALAYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKAL 549

  Fly   225 EFEEQEKVFTEQATQI-------------NAWDKL----LISNNGKIVELNDAVKKVKTD----- 267
            ....|.|:....||::             ..:|.|    |..|||..:......|.|..:
Zfish   550 TTPTQYKLTPRPATRVRPKALSSSGSSKSQLFDGLDDDELSLNNGAFMPRKSIKKLVLKNLNNSS 614

  Fly   268 --QQVLDQELEFIAT----QQKELEDSLGPLEKEFVNLPR---VDMERSQTYLMVENLDTQLKQM 323
              ...|::|.:.:|:    .|..|..||...|....|:.|   .|:|.|:.|...........|:
Zfish   615 LYNNSLNREADDLASPSEYPQNGLSLSLDEGEPREANMERRGEDDLEVSKFYTNPITKPIPHAQL 679

  Fly   324 SEDLKEIIDNLNEANKGQDTTDPIIQIGKILNAHMNSLQWIESQSTNISKKLEDIGKIQDS--QK 386
            |..|::.|...|....|               :|.|.|   |:.|       ||:...:||  ::
Zfish   680 SPLLQDTISEFNMRGSG---------------SHRNGL---EASS-------EDLSLAEDSIQEE 719

  Fly   387 RD 388
            ||
Zfish   720 RD 721

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Nup62	NP_001286489.1	Nsp1_C	194..300	CDD:309972	29/166 (17%)
		SMC_N	<213..392	CDD:330553	47/239 (20%)
nup98	NP_956979.2	Nucleoporin_FG	39..133	CDD:290362
		Nucleoporin_FG	217..357	CDD:290362	30/120 (25%)
		Nucleoporin_FG	324..>400	CDD:290362	20/84 (24%)
		Nucleoporin2	741..881	CDD:282016
		Nup96	1333..1626	CDD:288926

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R852
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.030