DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup62 and NUP98

DIOPT Version :9

Sequence 1:NP_001286489.1 Gene:Nup62 / 36830 FlyBaseID:FBgn0034118 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_001352054.1 Gene:NUP98 / 4928 HGNCID:8068 Length:1831 Species:Homo sapiens


Alignment Length:481 Identity:106/481 - (22%)
Similarity:162/481 - (33%) Gaps:165/481 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GATSSFSFGLSTGTPAAAPASGAATTAPATKTTFS----------FGTPAPTAGIG---GGDADN 66
            |..:....|.:||...::||:.:||...::.||.|          |||  .|.|.|   ||....
Human   214 GPQNQVGAGTTTGLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGT--STTGFGTNPGGLFGQ 276

  Fly    67 SKAQAPPAFG--FGLGSGTASAPLTLGTQAAANPASTTSATATGTSAAPPAFGGFTAQPAASVVP 129
            ...|....|.  ||..:.|.:...:.|..:.....||.:....|.:.|        :||......
Human   277 QNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQA--------SQPGGLFGT 333

  Fly   130 TIATSAPNTAATTTGLLG--GSGLGA--------PKTTAAASTTLTAAPSAIASTQ--------- 175
            ...||......|.|||.|  .:|.||        .|.|...|:| |:||| ..:|.         
Human   334 ATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSST-TSAPS-FGTTSGGLFGFGTN 396

  Fly   176 -------GAAPAP-TLSTG------------------------------GAFA----NLTTET-- 196
                   |:.||| ||.||                              |||.    |.||.|  
Human   397 TSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTATLG 461

  Fly   197 --------KTTDSSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISNNGK 253
                    ..||.:| |.|.|.   .|::|||..|........:|....:.....::       :
Human   462 FGAPQAPVALTDPNA-SAAQQA---VLQQHINSLTYSPFGDSPLFRNPMSDPKKKEE-------R 515

  Fly   254 IVELNDAVKKVKTD-----------QQVLDQELEFIATQQKELEDSLGPLEKEFVN---LPRVDM 304
            :...|.|.:|..|.           .:|..:.|:...|.:..|.|.|...|....|   :|:..:
Human   516 LKPTNPAAQKALTTPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLDDDEPSLANGAFMPKKSI 580

  Fly   305 ERSQTYLMVENLD-----TQLKQMSED----------------LKEIIDNLNEANKGQDT----- 343
            ::    |:::||:     :.:.:.||:                |.:.:|..::.:..:|:     
Human   581 KK----LVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDEDSLVSHF 641

  Fly   344 -TDPIIQ--------IGKILNAHMNS 360
             |:||.:        .|   |.|.||
Human   642 YTNPIAKPIPQTPESAG---NKHSNS 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup62NP_001286489.1 Nsp1_C 194..300 CDD:309972 26/129 (20%)
SMC_N <213..392 CDD:330553 35/197 (18%)
NUP98NP_001352054.1 Nucleoporin_FG 40..149 CDD:316182
Nucleoporin_FG 239..332 CDD:316182 23/102 (23%)
Herpes_BLLF1 <243..666 CDD:330317 98/452 (22%)
Nucleoporin_FG 363..463 CDD:316182 24/101 (24%)
Nucleoporin2 723..862 CDD:309287
Nup96 1348..1637 CDD:314912
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.030

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