DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup62 and nup58

DIOPT Version :9

Sequence 1:NP_001286489.1 Gene:Nup62 / 36830 FlyBaseID:FBgn0034118 Length:394 Species:Drosophila melanogaster
Sequence 2:XP_005162738.1 Gene:nup58 / 406510 ZFINID:ZDB-GENE-040426-2326 Length:600 Species:Danio rerio


Alignment Length:481 Identity:115/481 - (23%)
Similarity:188/481 - (39%) Gaps:149/481 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TTAAPTGGATSSFSFGLSTGTPAAAPAS------GAATTAPATKTT------------------- 47
            ||.||.......||||.:|.||||....      ||.|:.||..||                   
Zfish    13 TTGAPAAAGGGGFSFGAATSTPAAGTGGFSFGGFGAQTSTPAPATTSTTSTLGFGTSLFAQKPTT 77

  Fly    48 -FSFGTP-----APTAGIGGGDADNSKAQAPPAFGFGLGSGTASA-PLTLGTQAAANPAST---- 101
             ||..||     |.|:|:..|....|.| |...|..|.|...||| |.:|.|..|:.||:|    
Zfish    78 GFSLSTPASAAAASTSGLSLGSLTTSTA-ASTGFSLGFGKPAASATPFSLTTTTASAPAATGLSL 141

  Fly   102 ----------TSAT--------ATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGG 148
                      ||:|        |..||:||.:  ||:...:....||:           || ||.
Zfish   142 GSVLTSTVPQTSSTGFSLNLGAAAATSSAPAS--GFSFGSSLFSNPTL-----------TG-LGQ 192

  Fly   149 SGLGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTDSSAVSTASQLSYH 213
            |.||.|.:.....:|      ::|:|  :||||:|..||...:.::| |.||..: ||..:.|..
Zfish   193 STLGGPLSLGGLVST------SVATT--SAPAPSLGLGGVDFSTSSE-KNTDKLS-STRPEDSKA 247

  Fly   214 QLEEHINKWTLE-------FEEQEKVFTEQATQINAWDKLLISNNGKIVELNDAVKKVKTDQQVL 271
            ..:|::.....:       |.:::|...|:.::::                :..:.||:.|.::|
Zfish   248 LKDENLPAPICQDVDNFQKFVKEQKQVQEEISRMS----------------SKPILKVQEDIKML 296

  Fly   272 DQELEFIATQQKELEDSLGPLEKEFVNLPRVDMERSQTY-------------------------- 310
            .|.|...|:          .|::..:::.::.:|.||..                          
Zfish   297 RQLLSICAS----------GLQRNSLSIDKLKLETSQELKNADIALRTQKTPPGLQHENTAPSDY 351

  Fly   311 --LMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTT--DPIIQIGKILNAHMNSLQWIESQSTNI 371
              .:||..:.||:|..:.::|:.::|.....|...|  |..:.:.|:....:.....::....|:
Zfish   352 FRALVEQFEVQLQQYRQQIEELENHLTTQGSGSHITPQDLSMAMQKLYQTFVALAAQLQGVHENV 416

  Fly   372 -SKKLEDIGK----IQDSQKRDIFRA 392
             :.|.:.:|.    ::||  .|||.:
Zfish   417 KTLKHQYLGYRRAFLEDS--TDIFES 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup62NP_001286489.1 Nsp1_C 194..300 CDD:309972 19/112 (17%)
SMC_N <213..392 CDD:330553 34/220 (15%)
nup58XP_005162738.1 Nucleoporin_FG2 64..600 CDD:292589 95/430 (22%)
VirB5_like <356..>450 CDD:295212 19/87 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.030

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