| Sequence 1: | NP_001286489.1 | Gene: | Nup62 / 36830 | FlyBaseID: | FBgn0034118 | Length: | 394 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001274093.1 | Gene: | Nup98 / 269966 | MGIID: | 109404 | Length: | 1816 | Species: | Mus musculus |
| Alignment Length: | 492 | Identity: | 106/492 - (21%) |
|---|---|---|---|
| Similarity: | 164/492 - (33%) | Gaps: | 174/492 - (35%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 14 GGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSFGT-----PAPTAGIG---GG-------- 62
Fly 63 -----DADNSKAQAPPAFGFGLG-SGTASAPLT-----LGTQAAANPA---STTSATATGTSAAP 113
Fly 114 PAFG---GFTAQP---------------AASVVPTIATSAPNTAATTTGLLGGSGLGAPKTTAAA 160
Fly 161 STTLT----AAPSAIASTQGAAPAP-TLSTG------------------------------GAFA 190
Fly 191 NLTTETKT--------------TDSSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQIN 241
Fly 242 AWDKLLISNNGKIVELNDAVKKVKTD-----------QQVLDQELEFIATQQKELEDSLGPLEKE 295
Fly 296 FVN---LPRVDMERSQTYLMVENLD-----TQLKQMSED----------------LKEIIDNLNE 336
Fly 337 ANKGQDT------TDPIIQ--------IGKILNAHMN 359 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Nup62 | NP_001286489.1 | Nsp1_C | 194..300 | CDD:309972 | 25/133 (19%) |
| SMC_N | <213..392 | CDD:330553 | 34/196 (17%) | ||
| Nup98 | NP_001274093.1 | FG repeats 1 | 1..156 | ||
| Nucleoporin_FG | 40..149 | CDD:372653 | |||
| GLEBS, interaction with RAE1. /evidence=ECO:0000250 | 157..213 | ||||
| FG repeats 2 | 214..480 | 66/272 (24%) | |||
| Nucleoporin_FG | 239..332 | CDD:372653 | 21/93 (23%) | ||
| Nucleoporin_FG | 329..466 | CDD:372653 | 33/145 (23%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 512..535 | 1/29 (3%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 663..682 | 3/18 (17%) | |||
| Nucleoporin2 | 740..880 | CDD:367810 | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 886..937 | ||||
| Nup96 | 1333..1622 | CDD:371903 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R852 |
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 1.030 | |||||