DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup62 and nup189

DIOPT Version :9

Sequence 1:NP_001286489.1 Gene:Nup62 / 36830 FlyBaseID:FBgn0034118 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_594093.1 Gene:nup189 / 2541547 PomBaseID:SPAC1486.05 Length:1778 Species:Schizosaccharomyces pombe


Alignment Length:296 Identity:78/296 - (26%)
Similarity:104/296 - (35%) Gaps:101/296 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TTAAPT----GGAT-----SSFS-FGLSTGTPAAAPASGAATTAPATKTTFSFGTPAPTAGIGGG 62
            ||:.|:    ||:|     .:|| ||.:|.|......:|...:..||.|    ||...|.|:.||
pombe   314 TTSTPSTGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFGSNNATNT----GTGQTTGGLFGG 374

  Fly    63 DA---------------------DNSKAQAPPAFGFGLGSGTA---SAPL-TLGTQ--------A 94
            .|                     .||.......||||..:.||   :||. |.|..        |
pombe   375 AATGTGTGFGSSTGGFGSNTNNQPNSGTMGTGLFGFGANNNTANNNTAPTSTFGGNNSSNFSFGA 439

  Fly    95 AANPASTTSATATGTSAAPPAFGGFTAQPAASVVP-----TIATSAPNTAATTTGLLGGSGLGAP 154
            ..|.|:..|....|::...||.|||:....|:..|     :.||:||..|.  |||.||.|.||.
pombe   440 NNNAATKPSGFGFGSTTTTPASGGFSFGQNANNAPKPAFGSTATTAPKPAG--TGLFGGLGAGAN 502

  Fly   155 KTTAAAST---------TLTAAPSAIASTQGAAPA------------------------------ 180
            ..||..:|         ..||..:...|...:.|.                              
pombe   503 TNTATNATGTGGSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSNNANTTN 567

  Fly   181 --------PTLSTGGAFANLTTETKTTDSSAVSTAS 208
                    |:.:|||.|.|.|.:..:|.:|.:..||
pombe   568 TGGSLFNKPSTTTGGLFGNTTAQQPSTTTSGLFGAS 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup62NP_001286489.1 Nsp1_C 194..300 CDD:309972 4/15 (27%)
SMC_N <213..392 CDD:330553
nup189NP_594093.1 Nucleoporin_FG 19..132 CDD:290362
Nucleoporin_FG 241..337 CDD:290362 7/22 (32%)
Nucleoporin_FG 515..601 CDD:290362 13/85 (15%)
Nucleoporin2 795..934 CDD:282016
Nup96 1334..1629 CDD:288926
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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