DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup62 and npp-10

DIOPT Version :9

Sequence 1:NP_001286489.1 Gene:Nup62 / 36830 FlyBaseID:FBgn0034118 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_001367842.1 Gene:npp-10 / 175852 WormBaseID:WBGene00003796 Length:1678 Species:Caenorhabditis elegans


Alignment Length:451 Identity:105/451 - (23%)
Similarity:164/451 - (36%) Gaps:93/451 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TTAAPTGGATSSFSFGLS------TGTPAAA-------PASGA-----ATTAPAT--KTTFS--F 50
            :|::|.||.||:.:.|.|      ..|.||:       ||..:     |||..:|  :||.|  |
 Worm   243 STSSPFGGNTSTANTGSSLFGNNNANTSAASGSLFGAKPAGSSLFGSTATTGASTFGQTTGSSLF 307

  Fly    51 GTPAPTAGIGG---GDADN-------------------SKAQAPP---AFGFGLGSGTASAPLTL 90
            |...|....||   |:..|                   .:||..|   :.||..| |..:|....
 Worm   308 GNQQPQTNTGGSLFGNTQNQNQSGSLFGNTGTTGTGLFGQAQQQPQQQSSGFSFG-GAPAATNAF 371

  Fly    91 GTQAAANPAST----TSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNT----AATTTGLLG 147
            |..||||...:    ||...||:|.       |.|:||.|...|...:.|.|    .:|.||  |
 Worm   372 GQPAAANTGGSLFGNTSTANTGSSL-------FGAKPATSTGFTFGATQPTTTNAFGSTNTG--G 427

  Fly   148 G-SGLGAPKTTAA-ASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTDSSAVSTASQL 210
            | .|..|.|.... .:||.|.....:..:|     |..|:||.|.:.|..|:..::...:.|...
 Worm   428 GLFGNNAAKPGGLFGNTTNTGTGGGLFGSQ-----PQASSGGLFGSNTQATQPLNTGFGNLAQPQ 487

  Fly   211 SYHQLEE------HINKWTLEFEEQEKVFTEQATQINAWDKLLISNNGKIVELNDAVKKVKTDQQ 269
            ...|.:.      .:....|:.:...|....|.|.....|..|:..|.. .|::.......|.:|
 Worm   488 IVMQQQVAPVPVIGVTADVLQMQANMKSLKSQLTNAPYGDSPLLKYNAN-PEIDGKSSPASTQRQ 551

  Fly   270 VLDQELEFIATQQKELEDSLGPLEKEFVNLPRVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNL 334
                 |.|:|.::..|..|....:..|: :|.:....|.....|.......|.::...||...:|
 Worm   552 -----LRFLAAKKGALSSSSDAQDSSFI-IPPISKVMSDLSPAVTRSADVTKDLNYTSKEAPPSL 610

  Fly   335 ------NEANKGQDTTDPIIQIGKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDI 389
                  :..|.....|:..:.....|:..::|.  :::.....|.:|...|.::.|..:.:
 Worm   611 ARGLRNSTFNPNMSLTNRSVHESSALDKTIDSA--LDASMNGTSNRLGVRGSVRRSNLKQL 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup62NP_001286489.1 Nsp1_C 194..300 CDD:309972 19/111 (17%)
SMC_N <213..392 CDD:330553 32/189 (17%)
npp-10NP_001367842.1 Nucleoporin_FG 59..146 CDD:404514
Nucleoporin_FG 110..240 CDD:404514
Nucleoporin_FG 237..334 CDD:404514 27/90 (30%)
Nucleoporin_FG 305..431 CDD:404514 38/135 (28%)
Nucleoporin_FG 407..>487 CDD:404514 23/86 (27%)
Nucleoporin2 777..919 CDD:397975
Nup96 1259..1512 CDD:403363
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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