DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup62 and npp-4

DIOPT Version :9

Sequence 1:NP_001286489.1 Gene:Nup62 / 36830 FlyBaseID:FBgn0034118 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_493552.1 Gene:npp-4 / 173329 WormBaseID:WBGene00003790 Length:538 Species:Caenorhabditis elegans


Alignment Length:413 Identity:104/413 - (25%)
Similarity:159/413 - (38%) Gaps:109/413 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TTTAAPTGGATSSFSFGLST-----------GTPAAAPAS---GAATTAPATKTTFSFG-----T 52
            |:|.||....|..|.   ||           |.||||.:|   ||:.||||..:...||     |
 Worm     6 TSTTAPAASTTPLFG---STAAAAPKPGGLFGAPAAAMSSGLFGASQTAPAPASAGLFGSTTAPT 67

  Fly    53 PAPTAGI---GGGDADNSKAQAPPAFG-FGLGSGTASAPLTLGTQAAANPASTTSATATGT---S 110
            ||.|:.:   |     ::...|.|:.| ||..:.|.:||...|....|    :|:|.|||:   |
 Worm    68 PASTSSVPLFG-----STTTTASPSGGLFGAKTATTAAPAPTGGLFGA----STAAPATGSLFGS 123

  Fly   111 AAPPAFGGFTAQPAASVVPTI------ATSAPNTAATTTGLLGGSGLGAPKTTAAASTTL----- 164
            .||...|.|.|:...|..||:      :::||..||||:       .|||..||||...|     
 Worm   124 TAPATGGLFGAKSTTSAAPTLGGGLFGSSTAPAAAATTS-------FGAPPATAAAPLGLGGIQQ 181

  Fly   165 ---------TAAPSAIASTQGAAPAPTLSTGGAFANLTT---------ETK---------TTDSS 202
                     .|:.:|.:|..|...:...|..|.:....|         |.|         .|::.
 Worm   182 QNSSGGGLPNASGTATSSLTGTGDSKDASKDGEWTQAATLIRDLLPLIEDKFKKNREFMEETENM 246

  Fly   203 AVSTASQLSYHQLEEHINK---WTLEFEEQEKVFTEQATQIN---AWDKLLISNNGKIVELNDAV 261
            ::...:      :||.|:|   |..|........|:.:.:|.   :.||.|.....::.|.:.:.
 Worm   247 SIDNVA------IEEQIDKTRGWIEEVRRDVLTATQSSERIAYLVSTDKTLCDTTKRVQEHSGSA 305

  Fly   262 KKVKTDQQVLDQEL----EFIATQQKELEDSLGPLEKEFVNL----PRVDMERSQTYLM-----V 313
            .:. |....:.:.|    .|.......|::.:..|...|..|    ..:.||....|.:     |
 Worm   306 NQT-TYMNAIKEHLAELCNFYGNDMDALQERVNFLRNRFEKLLTGEKSITMEELDAYFLRCDANV 369

  Fly   314 ENLDTQLKQMSEDLKEIIDNLNE 336
            .|....:.::.::::||.|.|.|
 Worm   370 SNAHHHVTELGKEIEEIRDFLIE 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup62NP_001286489.1 Nsp1_C 194..300 CDD:309972 23/137 (17%)
SMC_N <213..392 CDD:330553 29/143 (20%)
npp-4NP_493552.1 Nucleoporin_FG 21..122 CDD:290362 36/109 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12084
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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