DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha44 and Atp6v1c1

DIOPT Version :9

Sequence 1:NP_001137679.1 Gene:Vha44 / 36826 FlyBaseID:FBgn0262511 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_079770.2 Gene:Atp6v1c1 / 66335 MGIID:1913585 Length:382 Species:Mus musculus


Alignment Length:831 Identity:248/831 - (29%)
Similarity:318/831 - (38%) Gaps:451/831 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLDQLVGLSDDLGKLDTYV 66
            |:|:|:|||||:||||||::.::..|:|.:||..:.||:||||||||||.||||||:|.|||.:|
Mouse     1 MTEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFV 65

  Fly    67 EQITRKVANYLGEVLEDQRDKLHENLMANNSPGPPDDSMPCRHHQRIKHLSLRHQRKHQHTHHQN 131
            |.:.:|||.|:.:||||.:||:.|||:|                                     
Mouse    66 EGVVKKVAQYMADVLEDSKDKVQENLLA------------------------------------- 93

  Fly   132 KPQHYHHHHHHHQLPQDLKGKSAATCSPATPPAPASAPPHLPPACACDVLAPGSLTGGSLTNLST 196
                                                                             
Mouse    94 ----------------------------------------------------------------- 93

  Fly   197 SHEPEPEFDVCPCDECFACAPPSTSATASTLLADECYSQTASSMLSATRCALSTVAAIATGSGLG 261
                                                                             
Mouse    94 ----------------------------------------------------------------- 93

  Fly   262 NGPSTSAAAAAAASNSSGGGGGGGPASCSTLCSSAYFSTSAPTTSSSVHSSMSRSNSKRLNNNTC 326
                                                                             
Mouse    94 ----------------------------------------------------------------- 93

  Fly   327 SINNNKLSFRSGSHVSQLHLATQQPQHHHSHPHQQPHTNPLQSPVQKSMSEDEGDASNAHEDGET 391
                                                                             
Mouse    94 ----------------------------------------------------------------- 93

  Fly   392 DEDPKSPHSVQSDLSDAFDWWFNKPKRNSKKSSAQQQHETAQLQHQQTTQQHATPLTPQNHNQYQ 456
                                                                             
Mouse    94 ----------------------------------------------------------------- 93

  Fly   457 NQHLSKAMTFWHQASTTPRSSYRSFFNSLADQIYSKRSTPSQLNINNGFNLTPTHRSSPVSSCCG 521
                                                                             
Mouse    94 ----------------------------------------------------------------- 93

  Fly   522 SSSQGRSSPDTDPAEPPEFPLSPAELPQYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLK 586
                                 |..:|..|:||||||||||||||||:||::||:|.:.|||.|||
Mouse    94 ---------------------SGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLK 137

  Fly   587 TKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYE 651
            :::.|||||||||||||:|..||||||:||::|||:.|:||||||.||||:|||:..|||:..||
Mouse   138 SRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYE 202

  Fly   652 KITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTK 716
            .:.:|:|||||.::.||.|..|.|||||:|..::|:..|||.|||||||.|||||:.|.|.|||:
Mouse   203 TLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMTR 267

  Fly   717 LMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKKSVKRLR 781
            |.||||||||||||||||||||||.|.||:|||||||||||||||||||||:|::|||||||:||
Mouse   268 LSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLR 332

  Fly   782 DVLNQLYGHLDGASAGGAVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVE 832
            :||::||.|||.::|  |:..|. :|||||...|.||:|||:||::.:::|
Mouse   333 EVLHELYKHLDSSAA--AIIDAP-MDIPGLNLSQQEYYPYVYYKIDCNLLE 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha44NP_001137679.1 V-ATPase_C 6..>98 CDD:301617 54/91 (59%)
3-helical coiled coil 57..77 CDD:270211 10/19 (53%)
V-ATPase_C <547..822 CDD:281248 186/274 (68%)
3-helical coiled coil 570..596 CDD:270211 14/25 (56%)
3-helical coiled coil 724..755 CDD:270211 27/30 (90%)
Atp6v1c1NP_079770.2 V-ATPase_C 5..370 CDD:397366 241/815 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849759
Domainoid 1 1.000 385 1.000 Domainoid score I808
eggNOG 1 0.900 - - E1_COG5127
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1281
Inparanoid 1 1.050 521 1.000 Inparanoid score I1254
Isobase 1 0.950 - 0 Normalized mean entropy S922
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016088at2759
OrthoFinder 1 1.000 - - FOG0001981
OrthoInspector 1 1.000 - - otm44094
orthoMCL 1 0.900 - - OOG6_101992
Panther 1 1.100 - - O PTHR10137
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1630
SonicParanoid 1 1.000 - - X1294
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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