DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha44 and atp6v1c1

DIOPT Version :9

Sequence 1:NP_001137679.1 Gene:Vha44 / 36826 FlyBaseID:FBgn0262511 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_989172.1 Gene:atp6v1c1 / 394779 XenbaseID:XB-GENE-948409 Length:382 Species:Xenopus tropicalis


Alignment Length:831 Identity:245/831 - (29%)
Similarity:311/831 - (37%) Gaps:451/831 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLDQLVGLSDDLGKLDTYV 66
            |:|:|:|||||:||||||::.:...|:|.:||..|.||:||||||||||.||||||:|.|||.:|
 Frog     1 MTEFWLISAPGEKTCQQTWEKLMAATTKNNNLSTNAKFNIPDLKVGTLDVLVGLSDELAKLDAFV 65

  Fly    67 EQITRKVANYLGEVLEDQRDKLHENLMANNSPGPPDDSMPCRHHQRIKHLSLRHQRKHQHTHHQN 131
            |...:|||.|:.:||||.|||:.|||:||.                                   
 Frog    66 EGTVKKVAQYMADVLEDSRDKVQENLLANG----------------------------------- 95

  Fly   132 KPQHYHHHHHHHQLPQDLKGKSAATCSPATPPAPASAPPHLPPACACDVLAPGSLTGGSLTNLST 196
                                                                             
 Frog    96 ----------------------------------------------------------------- 95

  Fly   197 SHEPEPEFDVCPCDECFACAPPSTSATASTLLADECYSQTASSMLSATRCALSTVAAIATGSGLG 261
                                                                             
 Frog    96 ----------------------------------------------------------------- 95

  Fly   262 NGPSTSAAAAAAASNSSGGGGGGGPASCSTLCSSAYFSTSAPTTSSSVHSSMSRSNSKRLNNNTC 326
                                                                             
 Frog    96 ----------------------------------------------------------------- 95

  Fly   327 SINNNKLSFRSGSHVSQLHLATQQPQHHHSHPHQQPHTNPLQSPVQKSMSEDEGDASNAHEDGET 391
                                                                             
 Frog    96 ----------------------------------------------------------------- 95

  Fly   392 DEDPKSPHSVQSDLSDAFDWWFNKPKRNSKKSSAQQQHETAQLQHQQTTQQHATPLTPQNHNQYQ 456
                                                                             
 Frog    96 ----------------------------------------------------------------- 95

  Fly   457 NQHLSKAMTFWHQASTTPRSSYRSFFNSLADQIYSKRSTPSQLNINNGFNLTPTHRSSPVSSCCG 521
                                                                             
 Frog    96 ----------------------------------------------------------------- 95

  Fly   522 SSSQGRSSPDTDPAEPPEFPLSPAELPQYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLK 586
                                   .:|..|:||||||||||||||||:||::||:|.:.|||.|||
 Frog    96 -----------------------VDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLK 137

  Fly   587 TKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYE 651
            .::.|||||||||||||:|..|||:||:||::|||:.|:||||||.||||:|||...|||:..||
 Frog   138 ARASAYNNLKGNLQNLERKNAGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYNDWVKQYE 202

  Fly   652 KITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTK 716
            .:.:|:|||||.::.||.|..|.|||||:|..::|:..|||.||:||||.|||||:.|.|.||.:
 Frog   203 TLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFVVRDFQYNEEEMKADKEEMNR 267

  Fly   717 LMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKKSVKRLR 781
            |.||||||||||||||||||||||.|.||||||||||||||||||||||||:|::||||::|:||
 Frog   268 LSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLR 332

  Fly   782 DVLNQLYGHLDGASAGGAVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVE 832
            :||..||.|||.::|  ::..|. :|||||...|.||:|||:||::.:::|
 Frog   333 EVLYDLYKHLDSSAA--SIIDAP-MDIPGLNLSQQEYYPYVYYKIDCNLLE 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha44NP_001137679.1 V-ATPase_C 6..>98 CDD:301617 57/91 (63%)
3-helical coiled coil 57..77 CDD:270211 10/19 (53%)
V-ATPase_C <547..822 CDD:281248 181/274 (66%)
3-helical coiled coil 570..596 CDD:270211 14/25 (56%)
3-helical coiled coil 724..755 CDD:270211 28/30 (93%)
atp6v1c1NP_989172.1 V-ATPase_C 5..370 CDD:397366 238/815 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 374 1.000 Domainoid score I870
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1281
Inparanoid 1 1.050 512 1.000 Inparanoid score I1282
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016088at2759
OrthoFinder 1 1.000 - - FOG0001981
OrthoInspector 1 1.000 - - otm49270
Panther 1 1.100 - - O PTHR10137
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1630
SonicParanoid 1 1.000 - - X1294
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.100

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