DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha44 and vha-11

DIOPT Version :9

Sequence 1:NP_001137679.1 Gene:Vha44 / 36826 FlyBaseID:FBgn0262511 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_001023451.1 Gene:vha-11 / 177017 WormBaseID:WBGene00006920 Length:384 Species:Caenorhabditis elegans


Alignment Length:831 Identity:215/831 - (25%)
Similarity:282/831 - (33%) Gaps:455/831 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLDQLVGLSDDLGKLDTYVEQ 68
            |||:||.||:|.....:|.:|..|.   |...|.|:.|||||||||||||||||||.||||..|.
 Worm     8 EYWLISVPGEKGANDAWDKLNRSTG---NTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDTSAEA 69

  Fly    69 ITRKVANYLGEVLEDQRDKLHENLMANNSPGPPDDSMPCRHHQRIKHLSLRHQRKHQHTHHQNKP 133
            :.||:..|..||||:.:.|:.|||:..|                                     
 Worm    70 VIRKLVQYFTEVLEEDKSKIAENLVIGN------------------------------------- 97

  Fly   134 QHYHHHHHHHQLPQDLKGKSAATCSPATPPAPASAPPHLPPACACDVLAPGSLTGGSLTNLSTSH 198
                         :|:|                                                
 Worm    98 -------------KDMK------------------------------------------------ 101

  Fly   199 EPEPEFDVCPCDECFACAPPSTSATASTLLADECYSQTASSMLSATRCALSTVAAIATGSGLGNG 263
                                                                             
 Worm   102 ----------------------------------------------------------------- 101

  Fly   264 PSTSAAAAAAASNSSGGGGGGGPASCSTLCSSAYFSTSAPTTSSSVHSSMSRSNSKRLNNNTCSI 328
                                                                             
 Worm   102 ----------------------------------------------------------------- 101

  Fly   329 NNNKLSFRSGSHVSQLHLATQQPQHHHSHPHQQPHTNPLQSPVQKSMSEDEGDASNAHEDGETDE 393
                                                                             
 Worm   102 ----------------------------------------------------------------- 101

  Fly   394 DPKSPHSVQSDLSDAFDWWFNKPKRNSKKSSAQQQHETAQLQHQQTTQQHATPLTPQNHNQYQNQ 458
                                                                             
 Worm   102 ----------------------------------------------------------------- 101

  Fly   459 HLSKAMTFWHQASTTPRSSYRSFFNSLADQIYSKRSTPSQLNINNGFNLTPTHRSSPVSSCCGSS 523
                                                                             
 Worm   102 ----------------------------------------------------------------- 101

  Fly   524 SQGRSSPDTDPAEPPEFPLSPAELPQYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTK 588
                                     .|:|:|||:.||||:||||:.:::||.|||.|||.|||.|
 Worm   102 -------------------------TYVTKFQWEGAKYPLKQSLKVLSEIIGKQISQIDNDLKVK 141

  Fly   589 SQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYEKI 653
            |..|||||..|.::::|..|||||::||||||.:.|:|:||||.|::|:|||:...:|...|..:
 Worm   142 SLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQTVIVVVPKISVKEWEQKYATL 206

  Fly   654 TDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTKLM 718
            :.|:||.||:|:.|:.::.|:.|||||||.:|||..|||.|||||||||:||.|.||:.|..|||
 Worm   207 SSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFIVRDFVYDEETLKAGRTERDKLM 271

  Fly   719 TDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDV 783
            .:|::|:.||:||||:||.|.|.|.||:|||||||||||||||||||||.:|||.|...|:||..
 Worm   272 AEKQRQYAPLIRWLKINFGEIFAAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQQKKLRQE 336

  Fly   784 LNQLYGHLDGASAGGAVSSADNVDIPGL-GFGQSEYFPYVFYKVNIDMVEQ 833
            |::||.|||| ||.|.:.:.:  |.|.| ..|.:||:||||:|:|||.:.:
 Worm   337 LHKLYIHLDG-SAAGPIDTLE--DSPALMSLGVNEYYPYVFFKLNIDFLNK 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha44NP_001137679.1 V-ATPase_C 6..>98 CDD:301617 48/91 (53%)
3-helical coiled coil 57..77 CDD:270211 10/19 (53%)
V-ATPase_C <547..822 CDD:281248 156/275 (57%)
3-helical coiled coil 570..596 CDD:270211 16/25 (64%)
3-helical coiled coil 724..755 CDD:270211 21/30 (70%)
vha-11NP_001023451.1 V-ATPase_C 10..373 CDD:281248 206/816 (25%)
3-helical coiled coil 58..78 CDD:270211 10/19 (53%)
3-helical coiled coil 123..149 CDD:270211 16/25 (64%)
3-helical coiled coil 277..308 CDD:270211 21/30 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167011
Domainoid 1 1.000 322 1.000 Domainoid score I656
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 435 1.000 Inparanoid score I949
Isobase 1 0.950 - 0 Normalized mean entropy S922
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016088at2759
OrthoFinder 1 1.000 - - FOG0001981
OrthoInspector 1 1.000 - - oto19969
orthoMCL 1 0.900 - - OOG6_101992
Panther 1 1.100 - - LDO PTHR10137
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1630
SonicParanoid 1 1.000 - - X1294
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.880

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