DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha44 and atp6v1c2

DIOPT Version :9

Sequence 1:NP_001137679.1 Gene:Vha44 / 36826 FlyBaseID:FBgn0262511 Length:836 Species:Drosophila melanogaster
Sequence 2:XP_002940167.1 Gene:atp6v1c2 / 100485790 XenbaseID:XB-GENE-962058 Length:381 Species:Xenopus tropicalis


Alignment Length:828 Identity:228/828 - (27%)
Similarity:294/828 - (35%) Gaps:453/828 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLDQLVGLSDDLGKLDTYV 66
            |||.|:||.|||||.....|.||.:|||. ||.:|.||.||:|||||||.||||||:|||||.|.
 Frog     1 MSELWLISVPGDKTNLTALDRMNTVTSKA-NLSSNAKFVIPELKVGTLDALVGLSDELGKLDAYA 64

  Fly    67 EQITRKVANYLGEVLEDQRDKLHENLMANNSPGPPDDSMPCRHHQRIKHLSLRHQRKHQHTHHQN 131
            |.:.:|:|.|:|||::|..||..|||:||.                                   
 Frog    65 ESLIKKIAQYIGEVMDDSTDKAQENLLANG----------------------------------- 94

  Fly   132 KPQHYHHHHHHHQLPQDLKGKSAATCSPATPPAPASAPPHLPPACACDVLAPGSLTGGSLTNLST 196
                                                                             
 Frog    95 ----------------------------------------------------------------- 94

  Fly   197 SHEPEPEFDVCPCDECFACAPPSTSATASTLLADECYSQTASSMLSATRCALSTVAAIATGSGLG 261
                                                                             
 Frog    95 ----------------------------------------------------------------- 94

  Fly   262 NGPSTSAAAAAAASNSSGGGGGGGPASCSTLCSSAYFSTSAPTTSSSVHSSMSRSNSKRLNNNTC 326
                                                                             
 Frog    95 ----------------------------------------------------------------- 94

  Fly   327 SINNNKLSFRSGSHVSQLHLATQQPQHHHSHPHQQPHTNPLQSPVQKSMSEDEGDASNAHEDGET 391
                                                                             
 Frog    95 ----------------------------------------------------------------- 94

  Fly   392 DEDPKSPHSVQSDLSDAFDWWFNKPKRNSKKSSAQQQHETAQLQHQQTTQQHATPLTPQNHNQYQ 456
                                                                             
 Frog    95 ----------------------------------------------------------------- 94

  Fly   457 NQHLSKAMTFWHQASTTPRSSYRSFFNSLADQIYSKRSTPSQLNINNGFNLTPTHRSSPVSSCCG 521
                                                                             
 Frog    95 ----------------------------------------------------------------- 94

  Fly   522 SSSQGRSSPDTDPAEPPEFPLSPAELPQYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLK 586
                                   .:|..||.||:|||||||:||.|:||.:::|||:.|||.|||
 Frog    95 -----------------------VDLISYLARFEWDMAKYPVKQPLKNIMEVLSKQMSQIDTDLK 136

  Fly   587 TKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYE 651
            ::|.||||:||:||:||:|..|:||||.|||:|.||.|:||||||.||||:|||.....|...||
 Frog   137 SRSSAYNNIKGSLQSLERKTVGNLLTRTLADIVNKEDFVLDSEYLVTLLVVVPKSSYGAWQKTYE 201

  Fly   652 KITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTK 716
            .::||:||||:::|.|||:..||.||||:||.::||..|||.|||||:|::||:||.:.|.|:.|
 Frog   202 SLSDMVVPRSTKMIAEDAEGGLFTVTLFRKVMDDFKAKARENKFIVREFLFNEKELQSEKAEIVK 266

  Fly   717 LMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKKSVKRLR 781
            |..|||:.:|||:|||||||||||...||:|||||||||||||||||||||::::|||||:||||
 Frog   267 LAADKKQLYGPLLRWLKVNFSEAFIGWIHIKALRVFVESVLRYGLPVNFQAVVLQPNKKSMKRLR 331

  Fly   782 DVLNQLYGHLDGASAGGAVSSAD-NVDIPGLGFGQSEYFPYVFYKVNI 828
            ||||.::.|||   ...|.:..| .::||||.....:|:|||.:|:::
 Frog   332 DVLNAIFRHLD---ENAAANMKDIGMEIPGLQLSSQDYYPYVCFKIDL 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha44NP_001137679.1 V-ATPase_C 6..>98 CDD:301617 55/91 (60%)
3-helical coiled coil 57..77 CDD:270211 10/19 (53%)
V-ATPase_C <547..822 CDD:281248 167/275 (61%)
3-helical coiled coil 570..596 CDD:270211 15/25 (60%)
3-helical coiled coil 724..755 CDD:270211 23/30 (77%)
atp6v1c2XP_002940167.1 V-ATPase_C 5..370 CDD:367405 222/816 (27%)
3-helical coiled coil 55..75 CDD:270211 10/19 (53%)
3-helical coiled coil 120..146 CDD:270211 15/25 (60%)
3-helical coiled coil 274..305 CDD:270211 23/30 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 374 1.000 Domainoid score I870
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016088at2759
OrthoFinder 1 1.000 - - FOG0001981
OrthoInspector 1 1.000 - - otm49270
Panther 1 1.100 - - LDO PTHR10137
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1630
SonicParanoid 1 1.000 - - X1294
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.140

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