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Protein Alignment CG4282 and prdm9

DIOPT Version :9

Sequence 1:	NP_611118.3	Gene:	CG4282 / 36825	FlyBaseID:	FBgn0034114	Length:	652	Species:	Drosophila melanogaster
Sequence 2:	NP_957196.1	Gene:	prdm9 / 393876	ZFINID:	ZDB-GENE-040426-1319	Length:	853	Species:	Danio rerio

Alignment Length:	736	Identity:	160/736 - (21%)
Similarity:	249/736 - (33%)	Gaps:	238/736 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 CLLCMCEYPAMMGDYIDVHSARGDQLEVTTIVNQHFPVQISKESDERICGRCWKIVSDFHTLHEF 71
            |..|...:|.::  |:..|..|       |..|::                     :.|...|..
Zfish   232 CPFCHYSFPTLV--YLHAHVKR-------THPNEY---------------------AQFTQTHPL 266

  Fly    72 VSAAQSSLQETKVALMEDDPL----TQETTSFPEIIKLATQ------EEEGVTEPQ--------- 117
            .|.|.:.:.|.:..|:..|..    ||..|..|: .:::||      :.|...||.
Zfish   267 ESEAHTPITEVEQCLVASDEALSTQTQPVTESPQ-EQISTQNGQPIHQTENSDEPDASDIYTAAG 330

  Fly   118 ELG---------GRNFFYPEIKIEEHELDTLPRIEI----------------LERSANT-QENQD 156
            |:.         ||:|. ....::.|: .|:...|.                |:|..:| ||.:.
Zfish   331 EISDEIHACVDCGRSFL-RSCHLKRHQ-RTIHSKEKPYCCSQCKKCFSQATGLKRHQHTHQEQEK 393

  Fly   157 QLEGAAR------------------RLRKRLKAE---------DGSSVDKDKDEDGVE---ETAE 191
            .:|...|                  .|.:.||..         :..|:..:.:||..|   :..:
Zfish   394 NIESPDRPSDIYPCTKCTLSFVAKINLHQHLKRHHHGEYLRLVESGSLTAETEEDHTEVCFDKQD 458

  Fly   192 P--APPK----------KRRGRPRKSDAAVAPPQ-KPKEDIQLDLKAEEL--------DEFVDEE 235
            |  .||.          |.||.|:|  .||..|: :|.::..|:::.:::        ..|.|.|
Zfish   459 PNYEPPSRGRKSTKNSLKGRGCPKK--VAVGRPRGRPPKNKNLEVEVQKISPICTNCEQSFSDLE 521

  Fly   236 TDPDFSCLVPSDNSSEDDGGSDGFDSDSDFELDNGKQEFAVLPKRTVVRPKKYKKRTKPAEPKVR 300
            |.....|      ...||.|            ||            |..|::..:.......:..
Zfish   522 TLKTHQC------PRRDDEG------------DN------------VEHPQEASQYICGECIRAF 556

  Fly   301 MSRELLEQRK-KQQEEYDVIIAKFFTSVLPCAICNLLVHNFTEMQRHHRLTHQVDPGYMMCCGRK 364
            .:.:||:..: .||.|....          |..|:|..:....::||.|..|..:..|   |
Zfish   557 SNLDLLKAHECIQQGEGSYC----------CPHCDLYFNRMCNLRRHERTIHSKEKPY---C--- 605

  Fly   365 FTQRKVLAEHVLVHWNPDHFKCSVCEKSFQNSRHLESHQQVHM------DPAVKLT---FSCDLC 420
                                 |:||.|||..|..|:.|||.|:      ..:...|   |.|..|
Zfish   606 ---------------------CTVCLKSFTQSSGLKRHQQSHLRRKSHRQSSALFTAAIFPCAYC 649

  Fly   421 SKTFLSKTAIDYHKLNKHVPKSEFKF---------------TCSECNKKFLTERKLKNHMSSMHD 470
            ..:|..:..: |..:.:|.|:...|:               :||:|.|.|.|.:..||| |....
Zfish   650 PFSFTDERYL-YKHIRRHHPEMSLKYLSFQEGGVLSVEKPHSCSQCCKSFSTIKGFKNH-SCFKQ 712

  Fly   471 PESTIICDKCGKQMRTKIILKKHQELMHSDKPRPEPELQQCQICGAWLKGMTGLKQHMKSIHVES 535
            .|...:|..|||.......||:||.:...:||      ..|..||........|..|:::    .
Zfish   713 GEKVYLCPDCGKAFSWFNSLKQHQRIHTGEKP------YTCSQCGKSFVHSGQLNVHLRT----H 767

  Fly   536 AGE--HRCHICAKVSPNARALRRHIYHNHECERKFKCTMCEKAFKRPQELKEHTSTHTGEVLYTC 598
            .||  ..|..|.:....:..|||| ...|...|..:|..|.|:|.|||.||.|...|.|..|:.|
Zfish   768 TGEKPFLCSQCGESFRQSGDLRRH-EQKHSGVRPCQCPDCGKSFSRPQSLKAHQQLHVGTKLFPC 831

  Fly   599 PNCPMTFFCSANMYKHRQRLH 619
            ..|..:|....::.:|.|::|
Zfish   832 TQCGKSFTRRYHLTRHHQKMH 852

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.