DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4282 and Klf4

DIOPT Version :9

Sequence 1:NP_611118.3 Gene:CG4282 / 36825 FlyBaseID:FBgn0034114 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_034767.2 Gene:Klf4 / 16600 MGIID:1342287 Length:483 Species:Mus musculus


Alignment Length:144 Identity:34/144 - (23%)
Similarity:54/144 - (37%) Gaps:30/144 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 QMRTKIILKKHQELMH-----SDKPRPEPELQQCQICGAWLKGMTGLKQHMKSIHVESAGEHRCH 542
            ||::::....:||||.     .::|:|                    |:..:|...:....|.|.
Mouse   359 QMQSQVPSLHYQELMPPGSCLPEEPKP--------------------KRGRRSWPRKRTATHTCD 403

  Fly   543 I--CAKVSPNARALRRHIYHNHECERKFKCTM--CEKAFKRPQELKEHTSTHTGEVLYTCPNCPM 603
            .  |.|....:..|:.|: ..|..|:.:.|..  |...|.|..||..|...|||...:.|..|..
Mouse   404 YAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR 467

  Fly   604 TFFCSANMYKHRQR 617
            .|..|.::..|.:|
Mouse   468 AFSRSDHLALHMKR 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4282NP_611118.3 zf-AD 7..81 CDD:285071
FYDLN_acid <191..268 CDD:302856
C2H2 Zn finger 330..351 CDD:275368
C2H2 Zn finger 360..378 CDD:275368
LIM 361..>400 CDD:295319
C2H2 Zn finger 386..406 CDD:275368
zf-C2H2_8 389..465 CDD:292531
C2H2 Zn finger 417..438 CDD:275368
C2H2 Zn finger 448..465 CDD:275368
C2H2 Zn finger 477..498 CDD:275368 5/14 (36%)
C2H2 Zn finger 511..532 CDD:275368 2/20 (10%)
C2H2 Zn finger 541..562 CDD:275368 5/22 (23%)
C2H2 Zn finger 570..590 CDD:275368 7/21 (33%)
C2H2 Zn finger 598..619 CDD:275368 6/20 (30%)
Klf4NP_034767.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..42
9aaTAD. /evidence=ECO:0000250|UniProtKB:O43474 99..107
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 294..395 10/55 (18%)
Interaction with ZNF296. /evidence=ECO:0000269|PubMed:24161396 386..483 26/97 (27%)
COG5048 <395..478 CDD:227381 22/83 (27%)
zf-C2H2 400..424 CDD:278523 6/24 (25%)
C2H2 Zn finger 402..424 CDD:275368 5/22 (23%)
C2H2 Zn finger 432..454 CDD:275368 7/21 (33%)
Interaction with target DNA 443..474 11/30 (37%)
zf-H2C2_2 446..471 CDD:290200 9/24 (38%)
C2H2 Zn finger 462..482 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.