DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8060 and rpgrb

DIOPT Version :10

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_001299605.1 Gene:rpgrb / 557752 ZFINID:ZDB-GENE-081015-2 Length:1413 Species:Danio rerio


Alignment Length:1073 Identity:189/1073 - (17%)
Similarity:349/1073 - (32%) Gaps:402/1073 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 SNLWLE-----QVALGAYHSLFCDKKGHLYAVGHGKGGRLGIGLENSLPAPKRVKVSSKLSGDSI 238
            |..||:     :::.|..|:....:.|.|:..|....|:||:|.:.::..|..||.   |..:.:
Zfish    29 SKFWLKNDVPLRISCGDEHTALVTENGKLFMFGSNNWGQLGLGTKTTVNKPTCVKA---LKSERV 90

  Fly   239 QCISVSRQHSLVLTHQSLVFACGLNTDHQLGVRDAAEQLTQFKEVVALRDKGASDLVRVIACDQH 303
            :..:..|.|:||.|.:..::|||.|.:.|||:.|..:: |.|..|.....:|.   ::::|...:
Zfish    91 KLTACGRTHTLVFTSRGNLYACGGNNEGQLGLGDCNDR-TSFHLVEFFNKQGP---IKMLAAGSN 151

  Fly   304 SIAYGSR--CVYVWGAN-QGQFGINSNTPSITVPTLIKLPAKTTIRFVEANNAATVIYNEEKIIT 365
            :.|..::  .:|:||.| :||.|:...:.::|       |.:.::                    
Zfish   152 TSAALTQDGRLYMWGDNSEGQIGLGKESNALT-------PQEVSV-------------------- 189

  Fly   366 LCYADKTRYIKTPNYEDLKSISVMGGNLKNSTKGSAAALKLLMLTETNVVYLWYENTQQFYRCNF 430
                                             |...              .|..       |.:
Zfish   190 ---------------------------------GKRV--------------FWVS-------CGY 200

  Fly   431 SPIRLHQIKKILYKCNQVMVLSEDGCVYRGKCNQIALPSSALQEKSRGSLDNWQDNDQNKTEISR 495
                        |....|.|   ||.:|            ...||..|.|.       ..||...
Zfish   201 ------------YHSAFVTV---DGALY------------TFGEKDSGKLG-------LSTEKLA 231

  Fly   496 EHVIRIELQRVPNIDRATYIFCDEGFS---------SFAV---LQESHTKYFRKPSLPRREHSFK 548
            .|.:..::..:|  ||...:.|..|.:         ||.:   .|..|..:..:..|||....|:
Zfish   232 NHKVPQQVTDIP--DRVVQVACGGGHTVALTENEVYSFGLGQFGQLGHGTFIFESRLPRVVEHFR 294

  Fly   549 KLLHETSDCDAVHDVVFHVDGEKFAAHKFIIYSRAPGLR----------------DLIRCYLDKD 597
            |...:.:.|...|..:...:|        ::|:...|..                .|...:||..
Zfish   295 KGRVKHAACGENHTALITDNG--------LLYTFGDGRHGKLGLGEENFTNQFKPTLCPRFLDYH 351

  Fly   598 IY---LNFDHL-------TGKMFELILNHIYSSYWPTEDDI--DCIQQS----LGPANPQ----- 641
            ::   ....|:       |.:..:|||.         |||:  |.:::|    ||..:.|     
Zfish   352 VHSVTCGGCHMLVLAKPRTERPDDLILE---------EDDVTEDYLEKSYTELLGDTHSQTTLNR 407

  Fly   642 ---------QRTRTCEMF------LPHLEKFQLVELTKYVQSYVRDHQFPLPNARKLFNRLYRSD 691
                     :|.|:.:.|      ||.|...|...|:  |.|.:|      |::::|        
Zfish   408 SLSARVRRRERERSPDQFGQMFRTLPALSGNQSASLS--VPSQIR------PSSKQL-------- 456

  Fly   692 HPELYDVRIVCKDGKVLGAHKCMLVARLEYFEMMFMHLWAERSSVTMEGVPAEYMEPVLDYLYSL 756
                         ||:                        ..:|:...|:.|:          |.
Zfish   457 -------------GKI------------------------PHNSLKTPGIRAK----------SF 474

  Fly   757 DNEAFCKQGYLETFLYNMITICDQYFIESLQNVCESLILDKISIRKCGEMLEFAAMYNCKILQKG 821
            |:                                .|.:.|..|::..||..:   :.|...:.| 
Zfish   475 DD--------------------------------RSSVEDSESVKDLGETTD---LLNLTHIMK- 503

  Fly   822 CMDFICQNLSRVLCYRSIEQCDGETLKCLNDHYRKMFKRVFDYRQITPFS--------EAIEDEL 878
             ||.....|       ::...:.:.:|.:.:|.::..|   ...:.||:|        :|:..||
Zfish   504 -MDPSDNTL-------TLSPMEKKKVKVVKEHGKEKGK---PRDEPTPYSKRAELLSRKALPTEL 557

  Fly   879 LLSFVDGCDVDLNYRMDAESKLKQAAKHKQKDL------RKQDAR-----HQYEQQAISSMMRSL 932
            |.|......|..:..:....|..:...|.::::      ||..::     .:....:.|..::..
Zfish   558 LRSSSGSSVVGDSRGLGTPHKSPKRRGHDKENVLIALEGRKPGSKTGKGMDKSRAGSKSLKLKHT 622

  Fly   933 SISEST-----QGTEVPSSPQDSARSEDKNWSRVVDKKDQKRKLAETALKVNNTLKHEDPPTQEL 992
            .:.||:     |.||.....|:......|..|:...:...|.|..:..|:|.:.|::        
Zfish   623 ELMESSDKVKKQSTEKTQQNQEVEVQRSKGTSKPTQEGTGKAKAKDHQLEVKSQLQN-------- 679

  Fly   993 VPIERKPLKEQTPPPPSHETEPTTPLSKSYNLDFSSLTPQSQKLSQKQRKRLSSESKSWRTNNPP 1057
            |..:.|.:|          ::|...:.:..:.|   ||.::.|....:.:::..::|...|.|..
Zfish   680 VAGKEKGVK----------SKPIIIVEQHIDQD---LTSKNSKEVLPKVQKVKGDTKIAETENKS 731

  Fly  1058 LVEQSSTPVAVPNAWGVTTTPSGSFNDSFTSPTT---GSSTDPTSFANMMRGHATSSTTPTDQSQ 1119
            .|.||.              .|||..|..:|.||   .:::.|||      |..||:.|...:::
Zfish   732 FVPQSK--------------KSGSEKDLKSSKTTKEISTTSHPTS------GKDTSAKTKKSRAE 776

  Fly  1120 SFSRILADEKRQRESYERMRNKSLVHTQIEERA 1152
                       ||:..::::...:|.|.:.|.|
Zfish   777 -----------QRQVEDKLKKTKMVPTVVSEAA 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANKYR <51..141 CDD:440430
ANK repeat 56..87 CDD:293786
ANK repeat 89..121 CDD:293786
ATS1 140..>355 CDD:444065 44/183 (24%)
BTB_POZ 543..643 CDD:453885 23/145 (16%)
BTB2_POZ_IBtk 691..802 CDD:349611 10/110 (9%)
BACK_IBtk 798..857 CDD:350575 10/58 (17%)
rpgrbNP_001299605.1 ATS1 40..365 CDD:444065 80/456 (18%)
Blue background indicates that the domain is not in the aligned region.

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