DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8060 and rcbtb1

DIOPT Version :9

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_001017352.2 Gene:rcbtb1 / 550106 XenbaseID:XB-GENE-987316 Length:599 Species:Xenopus tropicalis


Alignment Length:875 Identity:163/875 - (18%)
Similarity:255/875 - (29%) Gaps:358/875 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ARTQEYDCTAKCRLRQHGNAITAALTKRSID--------------NQKLASFIFKTC--GNFANI 52
            |...|::.|....|||.......|.||.:.|              .|.||| |.:.|  |:.|| 
 Frog    39 ASITEWEETTDSPLRQQICKPVTACTKPNADMVDFGKWPLFALLSPQDLAS-IRQACIFGSAAN- 101

  Fly    53 LDDLGRSAVHMSASTARYEILEWLLNHGAYINGQDYESGSSPLHRALYYGSIDCAVLLLRYGASL 117
                  .|::   :|...|:..:.:|....:...|.:|...|....:..|.   .::.|.||:..
 Frog   102 ------EAIY---TTQNNEVFVFGMNSSNCLGTGDNQSTIIPRRLDVLCGK---RIVDLSYGSGP 154

  Fly   118 ELLDEDTRCPLQAICRKCDDDDLATDSQNDVLVWGSNKNYNLGIGNEQNTNTPQAV--DFFRKSN 180
            .:|             .|::|       .:|..||.|....||.||......|..|  :...|..
 Frog   155 HIL-------------VCNED-------GEVYSWGHNGYSQLGNGNAIQGVAPVQVCMELLAKKV 199

  Fly   181 LWLEQVALGAYHSLFCDKKGHLYAVGHGKGGRLGIGLENSLPAPKRVKVSSKLSGDSIQCISVSR 245
            :   |||.|::||:.....|.::..|:...|::|.|...:...|:|  ||:.|....:..|:..:
 Frog   200 I---QVACGSHHSMALTSDGEVFCWGYNNCGQVGSGTTANQSVPRR--VSATLQSKVVVSIAAGQ 259

  Fly   246 QHSLVLTHQSLVFACGLNTDHQLGVRDAAEQLTQFKEVVALRDKGASDLVRVIACDQHSIAYGSR 310
            ..|:.:|....|:..|.|...|||:.:...||...:.|.|    ....:::|:....|::|...:
 Frog   260 SSSMAVTDNGHVYCWGYNGTGQLGIGNTGNQLMPCRLVFA----HPVCIIQVVLGYAHTLALSDQ 320

  Fly   311 CV-YVWGAN-QGQFGINSNTPSITVPTLIKLPAKTTIRFVEANNAATVIYNEEKIITLCYADKTR 373
            .| |.|||| .||.|| .|..:.|.|..:    .|..|.||              :|.|:     
 Frog   321 GVLYAWGANSHGQLGI-GNKSNQTAPVKV----GTNERMVE--------------VTACH----- 361

  Fly   374 YIKTPNYEDLKSISVMGGNLKNSTKGSAAALKLLMLTETNVVYLWYENTQQFYRCNFSPIRLHQI 438
                                  ||..|||.      :::..||:|                    
 Frog   362 ----------------------STNISAAK------SQSGQVYMW-------------------- 378

  Fly   439 KKILYKCNQVMVLSEDGCVYRGKCNQIALPSSALQEKSRGSLDNWQDNDQNKTEISREHVIRIEL 503
                                 |.|...:|.|..|                               
 Frog   379 ---------------------GLCRGQSLLSPHL------------------------------- 391

  Fly   504 QRVPNIDRATYIFC-DEGFSSFA-------VLQESHTKYFRKPSLPRREHSFKKLLHETSDCDAV 560
                     |:..| |:.|:.|:       .|...|..:.          :..:.|.:..|.:..
 Frog   392 ---------THFSCTDDVFACFSNPPVMWRFLSVEHEDFL----------TVAESLKKEFDSEET 437

  Fly   561 HDVVFHVDGEKFAAHKFIIYSRAPGLRDLIRCYLDKDIYLNFDHLTGKMFELILNHIYSSYWPTE 625
            .|:.|.|||                          ||||:                         
 Frog   438 SDLKFRVDG--------------------------KDIYV------------------------- 451

  Fly   626 DDIDCIQQSLGPANPQQRTRTCEMFLPHLEKFQLVELTKYVQSYVRDHQFPLPNARKLFNRLYRS 690
                                                                             
 Frog   452 ----------------------------------------------------------------- 451

  Fly   691 DHPELYDVRIVCKDGKVLGAHKCMLVARLEYFEMMFMHLWAERSSVTMEGVPAEY--MEPVLDYL 753
                                ||.:|..|.|:|..||...|.|.|...:|.....|  ....|:||
 Frog   452 --------------------HKAVLKIRCEHFRTMFQSHWNENSKDMIEIDQFSYAVYRAFLEYL 496

  Fly   754 YSLDNEAFCKQGYLETFLYNMITICDQYFIESLQNVCESLILDKISIRKCGEMLEFAAMYNCKIL 818
            |: ||.....:..:     .::.:...|....|:.:|:.:|...|::.....:|..|..|..:.|
 Frog   497 YT-DNVDLPPEDAI-----GLLDLATSYCENRLKKLCQHIIKRGITVDNAFLLLSAAVRYEAEDL 555

  Fly   819 QKGCMDFICQNLSRVLCYRSIEQCDGETLK 848
            :..|..|...:|:.|....:..|.||..||
 Frog   556 EDFCFRFCVNHLTDVTQTDAFWQMDGMLLK 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANK <46..138 CDD:238125 17/93 (18%)
ANK repeat 56..87 CDD:293786 4/30 (13%)
Ank_4 57..111 CDD:290365 8/53 (15%)
ANK repeat 89..121 CDD:293786 6/31 (19%)
Ank_2 95..>138 CDD:289560 6/42 (14%)
RCC1 147..195 CDD:278826 17/49 (35%)
RCC1 199..251 CDD:278826 12/51 (24%)
BTB 547..>635 CDD:295341 11/87 (13%)
BTB 684..795 CDD:279045 22/112 (20%)
BTB 697..798 CDD:197585 23/102 (23%)
SPOP_C_like 798..>834 CDD:269810 8/35 (23%)
rcbtb1NP_001017352.2 RCC1 111..153 CDD:278826 9/44 (20%)
RCC1 162..212 CDD:278826 18/59 (31%)
RCC1 215..265 CDD:278826 12/51 (24%)
RCC1 268..317 CDD:278826 12/52 (23%)
RCC1_2 304..333 CDD:290274 9/28 (32%)
RCC1 321..362 CDD:278826 19/86 (22%)
BTB 428..532 CDD:279045 33/245 (13%)
BTB 439..535 CDD:197585 32/237 (14%)
SPOP_C_like 535..591 CDD:269810 14/51 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4885
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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